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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_696 and PfGW456L13_697 are separated by 145 nucleotides
PfGW456L13_697 and PfGW456L13_698 are separated by 112 nucleotides
PfGW456L13_698 and PfGW456L13_699 are separated by 187 nucleotides
PfGW456L13_699 and PfGW456L13_700 overlap by 4 nucleotides
PfGW456L13_696 - L-lysine permease, at 792,214 to 792,843
_696
PfGW456L13_697 - Transcriptional regulator, AsnC family, at 792,989 to 793,462
_697
PfGW456L13_698 - Dihydrolipoamide dehydrogenase (EC 1.8.1.4), at 793,575 to 794,975
_698
PfGW456L13_699 - Membrane protease subunits, stomatin/prohibitin homologs, at 795,163 to 797,148
_699
PfGW456L13_700 - HflC protein, at 797,145 to 798,182
_700
Group
Condition
PfGW456L13
_696
PfGW456L13
_697
PfGW456L13
_698
PfGW456L13
_699
PfGW456L13
_700
carbon source
D-Fructose (C)
-1.1
-0.9
-0.1
+0.3
-0.3
carbon source
L-Glutamine (C)
-0.8
-0.6
-0.1
-0.0
-0.1
carbon source
a-Ketoglutaric (C)
-0.4
-1.0
-0.0
-0.0
+0.0
carbon source
L-Lactate (C)
+0.0
-1.3
+0.2
-0.0
-0.1
carbon source
Putrescine (C)
-1.0
+0.1
-0.3
+0.2
-0.2
carbon source
D-Lactate (C)
-0.4
+0.0
-0.1
-0.2
-0.4
carbon source
Glycerol (C)
-0.0
-0.2
-0.2
-0.0
-0.6
carbon source
L-Valine (C)
-0.7
+0.1
+0.0
-0.0
-0.2
carbon source
Tween 20 (C)
-0.2
-0.4
+0.1
-0.1
-0.2
carbon source
L-Tryptophan (C)
-0.5
-0.2
+0.0
+0.1
-0.1
nitrogen source
Uridine (N)
-0.5
-0.3
-0.1
+0.1
+0.1
carbon source
L-Tryptophan (C)
+0.2
-0.8
+0.1
+0.1
-0.2
carbon source
D-Glucose (C)
-0.4
-0.1
-0.1
-0.1
+0.2
carbon source
L-Arabinose (C)
+0.3
-0.6
-0.0
-0.0
-0.1
carbon source
D-Fructose (C)
+0.2
-0.2
+0.1
-0.4
-0.1
nitrogen source
D-Serine (N)
+0.3
-0.5
-0.1
+0.2
-0.2
carbon source
L-Malic (C)
-0.2
+0.3
-0.1
+0.1
-0.2
carbon source
D-Mannose (C)
+0.4
-0.5
-0.0
+0.1
-0.0
carbon source
octanoate (C)
+0.5
-0.5
-0.2
+0.0
+0.1
carbon source
L-Arabinose (C)
+0.6
-0.0
+0.0
-0.3
-0.4
nitrogen source
L-Serine (N)
+0.4
-0.4
+0.1
+0.1
-0.2
stress
Lomefloxacin 0.0004 mM
+0.6
-0.6
+0.1
+0.1
-0.0
nitrogen source
L-Isoleucine (N)
+0.5
-0.1
-0.1
+0.0
-0.2
stress
Aluminum chloride 5 mM
+0.4
-0.2
+0.1
+0.2
-0.1
control
LB control
+0.3
+0.3
-0.1
+0.0
-0.1
carbon source
D-Mannose (C)
+0.6
-0.2
+0.0
+0.2
-0.1
carbon source
casaminos (C)
+0.5
+0.2
+0.0
-0.1
-0.0
stress
Cisplatin 0.0125 mg/ml
+0.5
-0.1
+0.2
+0.1
+0.0
nitrogen source
L-Leucine (N)
+0.8
+0.3
-0.2
+0.1
-0.1
carbon source
D-Gluconic Acid (C)
+0.4
+0.3
+0.0
+0.2
+0.0
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