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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_662 and PfGW456L13_663 are separated by 60 nucleotides
PfGW456L13_663 and PfGW456L13_664 are separated by 44 nucleotides
PfGW456L13_664 and PfGW456L13_665 are separated by 50 nucleotides
PfGW456L13_665 and PfGW456L13_666 are separated by 39 nucleotides
PfGW456L13_662 - Two-component response regulator, at 752,189 to 752,431
_662
PfGW456L13_663 - DNA gyrase subunit B (EC 5.99.1.3), at 752,492 to 754,870
_663
PfGW456L13_664 - DNA recombination and repair protein RecF, at 754,915 to 755,988
_664
PfGW456L13_665 - DNA polymerase III beta subunit (EC 2.7.7.7), at 756,039 to 757,142
_665
PfGW456L13_666 - Chromosomal replication initiator protein DnaA, at 757,182 to 758,696
_666
Group
Condition
PfGW456L13
_662
PfGW456L13
_663
PfGW456L13
_664
PfGW456L13
_665
PfGW456L13
_666
stress
Cisplatin 0.0125 mg/ml
+0.1
N.D.
-1.1
N.D.
N.D.
carbon source
Trisodium citrate (C)
-1.0
N.D.
+0.1
N.D.
N.D.
carbon source
a-Ketoglutaric (C)
-0.3
N.D.
-0.6
N.D.
N.D.
stress
nitrate 200 mM
-0.2
N.D.
-0.7
N.D.
N.D.
stress
Vancomycin 0.5 mg/ml
-0.3
N.D.
-0.6
N.D.
N.D.
carbon source
D-Lactate (C)
-0.6
N.D.
-0.3
N.D.
N.D.
carbon source
D-Glucose (C)
-0.1
N.D.
-0.6
N.D.
N.D.
carbon source
D-Fructose (C)
-0.6
N.D.
-0.2
N.D.
N.D.
carbon source
octanoate (C)
-0.8
N.D.
+0.0
N.D.
N.D.
carbon source
L-Histidine (C)
-0.1
N.D.
-0.5
N.D.
N.D.
lb
LB
-0.4
N.D.
-0.2
N.D.
N.D.
carbon source
D,L-Lactate (C)
-0.3
N.D.
-0.3
N.D.
N.D.
stress
Aluminum chloride 2.5 mM
-0.1
N.D.
-0.4
N.D.
N.D.
carbon source
Tween 20 (C)
-0.4
N.D.
-0.2
N.D.
N.D.
carbon source
D-Lactate (C)
-0.3
N.D.
-0.2
N.D.
N.D.
stress
Aluminum chloride 5 mM
+0.1
N.D.
-0.6
N.D.
N.D.
nitrogen source
Gly-DL-Asp (N)
+0.1
N.D.
-0.5
N.D.
N.D.
carbon source
L-Histidine (C)
+0.1
N.D.
-0.5
N.D.
N.D.
carbon source
L-Arabinose (C)
+0.1
N.D.
-0.4
N.D.
N.D.
carbon source
Glycerol (C)
+0.3
N.D.
-0.5
N.D.
N.D.
carbon source
L-Asparagine (C)
+0.3
N.D.
-0.3
N.D.
N.D.
carbon source
Glycerol (C)
+0.3
N.D.
-0.3
N.D.
N.D.
carbon source
D-Serine (C)
+0.4
N.D.
-0.3
N.D.
N.D.
stress
Dimethyl Sulfoxide 7.5 vol%
+0.4
N.D.
-0.3
N.D.
N.D.
carbon source
L-Malic (C)
+0.4
N.D.
-0.3
N.D.
N.D.
carbon source
L-Phenylalanine (C)
+0.4
N.D.
-0.2
N.D.
N.D.
stress
Vancomycin 0.125 mg/ml
+0.4
N.D.
-0.2
N.D.
N.D.
carbon source
L-Arabinose (C)
+0.7
N.D.
-0.5
N.D.
N.D.
carbon source
D-Galactose (C)
+0.5
N.D.
-0.2
N.D.
N.D.
nitrogen source
Gly-Glu (N)
+0.5
N.D.
-0.2
N.D.
N.D.
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