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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_581 and PfGW456L13_582 overlap by 23 nucleotides
PfGW456L13_582 and PfGW456L13_583 are separated by 71 nucleotides
PfGW456L13_583 and PfGW456L13_584 are separated by 437 nucleotides
PfGW456L13_584 and PfGW456L13_585 are separated by 10 nucleotides
PfGW456L13_581 - hypothetical protein, at 674,425 to 674,538
_581
PfGW456L13_582 - probable exported protein YPO0432, at 674,516 to 674,680
_582
PfGW456L13_583 - FIG00956005: hypothetical protein, at 674,752 to 675,039
_583
PfGW456L13_584 - alginate biosynthesis transcriptional regulatory protein AlgB, at 675,477 to 676,823
_584
PfGW456L13_585 - Sensory box histidine kinase, at 676,834 to 678,624
_585
Group
Condition
PfGW456L13
_581
PfGW456L13
_582
PfGW456L13
_583
PfGW456L13
_584
PfGW456L13
_585
carbon source
a-Ketoglutaric (C)
-2.0
-4.0
N.D.
+0.2
+0.0
carbon source
L-Malic (C)
-1.4
-3.0
N.D.
+0.2
-0.4
carbon source
L-Arabinose (C)
-0.9
-2.8
N.D.
-0.2
-0.0
carbon source
octanoate (C)
-3.0
-0.1
N.D.
+0.2
+0.0
carbon source
D-Galactose (C)
-2.0
-0.4
N.D.
+0.1
-0.2
carbon source
L-Valine (C)
-2.0
-0.5
N.D.
+0.2
+0.1
carbon source
D-Mannose (C)
-0.9
-1.5
N.D.
+0.1
+0.0
carbon source
succinate (C)
-1.8
-0.3
N.D.
+0.1
-0.2
carbon source
a-Ketoglutaric (C)
-0.6
-2.1
N.D.
+0.5
-0.0
carbon source
Glycerol (C)
-1.4
-0.4
N.D.
+0.0
+0.1
carbon source
D-Alanine (C)
-1.4
-0.3
N.D.
+0.0
+0.0
nitrogen source
L-Proline (N)
-1.2
-0.6
N.D.
+0.2
-0.0
stress
Vancomycin 0.25 mg/ml
-1.3
-0.3
N.D.
+0.1
+0.0
carbon source
D-Gluconic Acid (C)
+0.3
-2.2
N.D.
+0.4
+0.1
nitrogen source
Cytosine (N)
-0.6
-0.8
N.D.
-0.0
+0.2
carbon source
L-Alanine (C)
-1.4
+0.1
N.D.
+0.0
+0.0
nitrogen source
Glycine (N)
-1.1
-0.1
N.D.
-0.0
+0.2
nitrogen source
Gly-DL-Asp (N)
-1.1
+0.1
N.D.
-0.2
+0.1
stress
Bacitracin 0.5 mg/ml
-0.5
-0.7
N.D.
+0.3
-0.1
nitrogen source
L-Citrulline (N)
-1.3
+0.5
N.D.
-0.0
+0.1
carbon source
D-Fructose (C)
-1.8
+0.8
N.D.
+0.1
+0.2
carbon source
L-Malic (C)
-0.6
+0.3
N.D.
+0.4
-0.4
carbon source
Putrescine (C)
-0.9
+0.1
N.D.
+0.4
+0.0
carbon source
L-Phenylalanine (C)
-0.7
+0.3
N.D.
+0.4
+0.0
carbon source
D-Lactate (C)
-0.2
+0.9
N.D.
-0.2
-0.4
carbon source
D-Glucose (C)
-0.6
-0.1
N.D.
+0.3
+0.5
carbon source
L-Lactate (C)
+0.6
+0.5
N.D.
-0.4
-0.1
lb
LB
+1.1
+0.2
N.D.
-0.0
-0.2
carbon source
L-Tryptophan (C)
+0.2
+0.6
N.D.
+0.8
+0.3
carbon source
L-Tryptophan (C)
+1.0
+0.5
N.D.
+1.1
+0.3
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