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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_533 and PfGW456L13_534 overlap by 11 nucleotides
PfGW456L13_534 and PfGW456L13_535 are separated by 42 nucleotides
PfGW456L13_535 and PfGW456L13_536 are separated by 325 nucleotides
PfGW456L13_536 and PfGW456L13_537 overlap by 4 nucleotides
PfGW456L13_533 - Type I secretion system, membrane fusion protein LapC, at 614,547 to 615,911
_533
PfGW456L13_534 - Type I secretion system ATPase, LssB family LapB, at 615,901 to 618,057
_534
PfGW456L13_535 - Type I secretion system, outer membrane component LapE, at 618,100 to 619,488
_535
PfGW456L13_536 - T1SS secreted agglutinin RTX, at 619,814 to 623,119
_536
PfGW456L13_537 - T1SS secreted agglutinin RTX, at 623,116 to 623,496
_537
Group
Condition
PfGW456L13
_533
PfGW456L13
_534
PfGW456L13
_535
PfGW456L13
_536
PfGW456L13
_537
nitrogen source
L-Leucine (N)
+0.1
-0.1
-0.2
+0.1
N.D.
nitrogen source
L-Threonine (N)
-0.1
-0.1
+0.1
+0.2
N.D.
carbon source
L-Asparagine (C)
-0.0
+0.1
-0.2
+0.1
N.D.
carbon source
D-Fructose (C)
-0.1
+0.3
-0.1
+0.0
N.D.
stress
Vancomycin 0.25 mg/ml
-0.0
+0.2
-0.1
+0.2
N.D.
carbon source
L-Valine (C)
+0.2
-0.1
+0.1
+0.1
N.D.
carbon source
succinate (C)
+0.1
-0.1
+0.0
+0.2
N.D.
carbon source
D-Galactose (C)
+0.2
+0.3
-0.3
+0.2
N.D.
carbon source
a-Ketoglutaric (C)
+0.1
-0.0
+0.2
+0.2
N.D.
carbon source
L-Tryptophan (C)
+0.2
+0.2
-0.1
+0.1
N.D.
carbon source
casaminos (C)
+0.3
+0.1
+0.0
+0.1
N.D.
carbon source
Trisodium citrate (C)
+0.2
+0.2
+0.0
+0.1
N.D.
carbon source
D-Galactose (C)
+0.2
+0.3
-0.2
+0.2
N.D.
carbon source
D-Glucose (C)
+0.4
+0.3
-0.4
+0.3
N.D.
carbon source
L-Arabinose (C)
+0.2
+0.3
-0.1
+0.3
N.D.
carbon source
L-Arabinose (C)
+0.4
+0.1
-0.1
+0.2
N.D.
carbon source
L-Malic (C)
+0.1
+0.2
+0.1
+0.3
N.D.
carbon source
D-Lactate (C)
+0.2
+0.4
-0.5
+0.6
N.D.
carbon source
Glycerol (C)
+0.4
+0.2
-0.1
+0.4
N.D.
carbon source
D-Fructose (C)
+0.5
+0.6
-0.4
+0.3
N.D.
carbon source
Glycerol (C)
+0.3
+0.4
-0.0
+0.3
N.D.
carbon source
a-Ketoglutaric (C)
+0.6
+0.2
-0.2
+0.3
N.D.
carbon source
D,L-Lactate (C)
+0.3
+0.4
-0.1
+0.4
N.D.
carbon source
octanoate (C)
+0.4
+0.2
+0.1
+0.4
N.D.
carbon source
D-Gluconic Acid (C)
+0.4
+0.4
+0.1
+0.1
N.D.
carbon source
L-Histidine (C)
+0.5
+0.3
+0.0
+0.3
N.D.
carbon source
L-Lactate (C)
+0.6
+0.5
-0.1
+0.4
N.D.
carbon source
D-Gluconic Acid (C)
+0.5
+0.7
-0.0
+0.5
N.D.
carbon source
D-Lactate (C)
+0.7
+0.7
-0.1
+0.5
N.D.
carbon source
L-Histidine (C)
+0.7
+0.5
+0.1
+0.6
N.D.
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