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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_531 and PfGW456L13_532 are separated by 18 nucleotides
PfGW456L13_532 and PfGW456L13_533 are separated by 371 nucleotides
PfGW456L13_533 and PfGW456L13_534 overlap by 11 nucleotides
PfGW456L13_534 and PfGW456L13_535 are separated by 42 nucleotides
PfGW456L13_531 - Taurine-binding periplasmic protein TauA, at 612,244 to 613,269
_531
PfGW456L13_532 - Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17), at 613,288 to 614,175
_532
PfGW456L13_533 - Type I secretion system, membrane fusion protein LapC, at 614,547 to 615,911
_533
PfGW456L13_534 - Type I secretion system ATPase, LssB family LapB, at 615,901 to 618,057
_534
PfGW456L13_535 - Type I secretion system, outer membrane component LapE, at 618,100 to 619,488
_535
Group
Condition
PfGW456L13
_531
PfGW456L13
_532
PfGW456L13
_533
PfGW456L13
_534
PfGW456L13
_535
carbon source
D-Glucose (C)
-0.1
-1.3
+0.4
+0.3
-0.4
carbon source
Putrescine (C)
-0.0
-1.4
+0.3
+0.1
-0.0
carbon source
D-Glucosamine Hydrochloride (C)
-0.0
-0.4
-0.1
+0.1
-0.0
carbon source
L-Glutamine (C)
-0.1
-0.4
+0.1
-0.1
+0.0
carbon source
D-Fructose (C)
+0.0
-0.5
-0.1
+0.3
-0.1
carbon source
Trisodium citrate (C)
-0.2
-0.4
+0.2
+0.2
+0.0
carbon source
L-Arabinose (C)
-0.2
-0.3
+0.2
+0.3
-0.1
carbon source
L-Valine (C)
-0.2
-0.1
+0.2
-0.1
+0.1
carbon source
D-Mannose (C)
+0.2
-0.2
+0.1
+0.1
-0.2
carbon source
octanoate (C)
-0.3
-0.4
+0.4
+0.2
+0.1
carbon source
L-Lactate (C)
-0.2
-0.7
+0.6
+0.5
-0.1
carbon source
D-Lactate (C)
-0.0
+0.1
+0.2
+0.4
-0.5
carbon source
D-Galactose (C)
-0.1
+0.1
+0.2
+0.3
-0.3
nitrogen source
L-Isoleucine (N)
-0.0
+0.3
-0.1
+0.1
-0.1
carbon source
L-Tryptophan (C)
+0.1
-0.2
+0.2
+0.2
-0.1
carbon source
Glycerol (C)
-0.0
-0.2
+0.4
+0.2
-0.1
carbon source
L-Arabinose (C)
-0.2
+0.1
+0.4
+0.1
-0.1
carbon source
D,L-Lactate (C)
-0.1
-0.2
+0.3
+0.4
-0.1
carbon source
a-Ketoglutaric (C)
-0.3
+0.1
+0.6
+0.2
-0.2
lb
LB
+0.0
+0.5
-0.1
+0.0
-0.0
carbon source
L-Histidine (C)
+0.1
-0.4
+0.5
+0.3
+0.0
carbon source
Glycerol (C)
+0.0
-0.2
+0.3
+0.4
-0.0
carbon source
D-Fructose (C)
+0.0
-0.1
+0.5
+0.6
-0.4
carbon source
D-Galactose (C)
+0.1
+0.2
+0.2
+0.3
-0.2
carbon source
D-Gluconic Acid (C)
+0.0
-0.2
+0.4
+0.4
+0.1
carbon source
L-Malic (C)
+0.0
+0.3
+0.1
+0.2
+0.1
carbon source
L-Malic (C)
+0.1
+0.4
+0.1
+0.2
+0.1
carbon source
D-Gluconic Acid (C)
-0.2
+0.0
+0.5
+0.7
-0.0
carbon source
L-Histidine (C)
-0.0
-0.1
+0.7
+0.5
+0.1
carbon source
D-Lactate (C)
+0.1
+0.1
+0.7
+0.7
-0.1
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