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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_5037 and PfGW456L13_5038 are separated by 50 nucleotides
PfGW456L13_5038 and PfGW456L13_5039 overlap by 4 nucleotides
PfGW456L13_5039 and PfGW456L13_5040 are separated by 213 nucleotides
PfGW456L13_5040 and PfGW456L13_5041 overlap by 4 nucleotides
PfGW456L13_5037 - Rare lipoprotein A, at 5,613,522 to 5,613,896
_5037
PfGW456L13_5038 - K+-dependent Na+/Ca+ exchanger related-protein, at 5,613,947 to 5,615,008
_5038
PfGW456L13_5039 - 4-carboxymuconolactone decarboxylase (EC 4.1.1.44), at 5,615,005 to 5,615,385
_5039
PfGW456L13_5040 - PhoP/Q-regulated protein PqaA, at 5,615,599 to 5,617,080
_5040
PfGW456L13_5041 - membrane protein, putative, at 5,617,077 to 5,618,018
_5041
Group
Condition
PfGW456L13
_5037
PfGW456L13
_5038
PfGW456L13
_5039
PfGW456L13
_5040
PfGW456L13
_5041
carbon source
a-Ketoglutaric (C)
+0.3
-0.7
-2.9
+0.0
-0.1
carbon source
D-Gluconic Acid (C)
-0.5
+0.4
-1.2
-0.1
-0.2
stress
Vancomycin 0.25 mg/ml
-0.8
-0.1
-0.3
-0.0
+0.1
stress
Fusidic 0.03 mg/ml
-0.6
-0.3
-0.0
-0.1
-0.0
carbon source
L-Phenylalanine (C)
-0.0
-0.2
-0.7
-0.1
+0.1
carbon source
L-Arabinose (C)
-0.0
-0.1
-1.1
+0.2
+0.1
stress
Cephalothin 3 mg/ml
-0.4
+0.2
-0.6
-0.1
+0.1
nitrogen source
D-Serine (N)
-0.3
-0.4
+0.2
+0.1
-0.3
carbon source
D-Galactose (C)
+0.6
-0.4
-1.0
+0.1
+0.1
stress
Dimethyl Sulfoxide 7.5 vol%
-0.3
-0.2
+0.4
-0.1
-0.2
carbon source
D-Gluconic Acid (C)
-0.4
-0.4
+0.4
+0.2
-0.1
carbon source
D-Glucose (C)
-1.3
+0.2
+0.6
+0.3
-0.0
carbon source
D-Glucosamine Hydrochloride (C)
+0.2
-0.2
-0.5
+0.0
+0.2
carbon source
L-Histidine (C)
-0.5
-0.1
+0.4
-0.1
+0.2
stress
Aluminum chloride 5 mM
-0.4
-0.3
+0.7
-0.2
+0.1
nitrogen source
Gly-DL-Asp (N)
-0.4
+0.2
+0.6
-0.1
-0.1
carbon source
D-Alanine (C)
-0.5
-0.1
+0.7
-0.0
+0.1
carbon source
L-Lactate (C)
-0.5
+0.2
+0.4
-0.0
+0.1
carbon source
Putrescine (C)
-0.2
+0.1
+0.8
-0.2
-0.2
carbon source
Glycerol (C)
-0.1
-0.2
+0.3
+0.0
+0.4
carbon source
a-Ketoglutaric (C)
-0.6
-0.2
+0.6
+0.2
+0.6
carbon source
D-Lactate (C)
+0.6
-0.3
+0.5
-0.3
+0.1
nitrogen source
L-Tryptophan (N)
+0.3
+0.3
+0.3
-0.0
-0.2
carbon source
octanoate (C)
+0.2
+1.1
-0.7
+0.3
-0.1
nitrogen source
L-Threonine (N)
+0.3
-0.1
+0.7
-0.1
+0.1
nitrogen source
Putrescine (N)
+0.2
+0.6
+0.2
+0.2
-0.0
carbon source
L-Valine (C)
+0.3
+0.2
+0.4
+0.1
+0.2
carbon source
L-Glutamine (C)
+0.3
+0.2
+0.6
-0.0
-0.0
carbon source
D-Mannose (C)
+0.6
-0.1
+0.3
+0.2
+0.2
carbon source
L-Alanine (C)
+0.3
+0.1
+0.7
+0.1
+0.1
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