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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_4986 and PfGW456L13_4987 are separated by 191 nucleotides
PfGW456L13_4987 and PfGW456L13_4988 are separated by 122 nucleotides
PfGW456L13_4988 and PfGW456L13_4989 are separated by 40 nucleotides
PfGW456L13_4989 and PfGW456L13_4990 overlap by 27 nucleotides
PfGW456L13_4986 - 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34), at 5,564,814 to 5,565,917
_4986
PfGW456L13_4987 - Glutathione peroxidase family protein, at 5,566,109 to 5,566,591
_4987
PfGW456L13_4988 - FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8), at 5,566,714 to 5,567,199
_4988
PfGW456L13_4989 - hypothetical protein, at 5,567,240 to 5,567,560
_4989
PfGW456L13_4990 - Phosphate acetyltransferase (EC 2.3.1.8), at 5,567,534 to 5,569,654
_4990
Group
Condition
PfGW456L13
_4986
PfGW456L13
_4987
PfGW456L13
_4988
PfGW456L13
_4989
PfGW456L13
_4990
carbon source
D-Fructose (C)
-0.8
-0.5
-0.5
-0.1
+0.1
nitrogen source
L-Citrulline (N)
-0.5
+0.0
-0.4
-0.1
-0.2
carbon source
L-Arabinose (C)
+0.2
-0.5
-0.4
+0.0
-0.3
stress
Lomefloxacin 0.0004 mM
-0.4
-0.4
-0.4
+0.1
+0.1
carbon source
L-Malic (C)
-0.9
+0.3
-0.1
+0.1
-0.2
nitrogen source
Gly-DL-Asp (N)
-0.3
+0.2
-0.1
+0.2
-0.8
nitrogen source
Cytosine (N)
-0.3
+0.2
-0.3
+0.0
-0.3
carbon source
D-Gluconic Acid (C)
-1.1
+0.6
-0.3
+0.4
-0.1
carbon source
D,L-Lactate (C)
-0.3
+0.3
-0.2
-0.2
-0.1
carbon source
L-Lactate (C)
-0.2
+0.4
-0.0
-0.0
-0.5
carbon source
a-Ketoglutaric (C)
-0.4
-0.3
+0.2
-0.2
+0.5
stress
Fusidic 0.03 mg/ml
-0.2
-0.4
+0.1
-0.1
+0.2
carbon source
L-Malic (C)
-0.5
+0.3
+0.0
+0.1
-0.1
carbon source
octanoate (C)
-0.0
-0.5
+0.0
+0.4
+0.2
carbon source
L-Glutamine (C)
+0.1
+0.1
-0.5
+0.0
+0.4
nitrogen source
L-Leucine (N)
+0.3
+0.2
-0.0
+0.5
-0.7
stress
Vancomycin 0.5 mg/ml
+0.3
-0.4
+0.2
-0.1
+0.3
stress
A22 0.04 mg/ml
+0.3
+0.1
-0.4
-0.1
+0.4
stress
Thallium(I) acetate 0.004 mg/ml
+0.2
+0.2
-0.4
+0.1
+0.2
stress
Vancomycin 0.125 mg/ml
+0.5
-0.5
+0.2
-0.0
+0.3
carbon source
L-Tryptophan (C)
-0.1
-0.2
+0.4
-0.1
+0.4
carbon source
D-Gluconic Acid (C)
+0.3
-0.1
+0.3
+0.2
-0.2
carbon source
L-Alanine (C)
+0.3
+0.0
+0.5
+0.1
-0.3
carbon source
a-Ketoglutaric (C)
-0.2
+0.0
+0.3
+0.1
+0.5
carbon source
succinate (C)
-0.1
-0.2
+0.5
-0.1
+0.6
carbon source
Putrescine (C)
-0.3
+0.2
+0.7
+0.1
+0.1
carbon source
D-Fructose (C)
+0.3
-0.2
+0.9
+0.1
-0.0
carbon source
Glycerol (C)
+0.5
+0.1
+0.3
+0.2
+0.1
carbon source
D-Galactose (C)
+0.3
+0.2
+0.7
+0.1
-0.1
carbon source
Trisodium citrate (C)
+0.4
+0.4
+0.5
-0.1
+0.3
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