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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_4981 and PfGW456L13_4982 are separated by 248 nucleotides
PfGW456L13_4982 and PfGW456L13_4983 are separated by 179 nucleotides
PfGW456L13_4983 and PfGW456L13_4984 are separated by 314 nucleotides
PfGW456L13_4984 and PfGW456L13_4985 are separated by 60 nucleotides
PfGW456L13_4981 - Type III effector HopPmaJ, at 5,559,422 to 5,559,760
_4981
PfGW456L13_4982 - Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19), at 5,560,009 to 5,561,259
_4982
PfGW456L13_4983 - Thioredoxin reductase (EC 1.8.1.9), at 5,561,439 to 5,562,395
_4983
PfGW456L13_4984 - Sulfate transporter, CysZ-type, at 5,562,710 to 5,563,462
_4984
PfGW456L13_4985 - Glycosyl transferase, group 1 family protein, at 5,563,523 to 5,564,698
_4985
Group
Condition
PfGW456L13
_4981
PfGW456L13
_4982
PfGW456L13
_4983
PfGW456L13
_4984
PfGW456L13
_4985
carbon source
L-Arabinose (C)
-2.1
-0.1
N.D.
-0.3
+0.2
carbon source
Trisodium citrate (C)
-1.5
-0.1
N.D.
-0.3
+0.1
carbon source
D,L-Lactate (C)
-1.8
+0.1
N.D.
+0.4
-0.2
stress
Lomefloxacin 0.0004 mM
-0.8
-0.0
N.D.
-0.3
-0.3
carbon source
L-Asparagine (C)
-0.7
-0.3
N.D.
-0.0
-0.2
carbon source
D-Serine (C)
-0.4
-0.3
N.D.
-0.1
-0.3
carbon source
Tween 20 (C)
-0.7
-0.2
N.D.
-0.2
+0.0
nitrogen source
Putrescine (N)
-1.1
+0.3
N.D.
+0.0
-0.1
carbon source
D-Glucose (C)
-0.6
-0.5
N.D.
+0.0
+0.1
carbon source
L-Valine (C)
-0.9
+0.1
N.D.
+0.2
-0.2
nitrogen source
D-Serine (N)
+0.1
-0.1
N.D.
-0.4
-0.4
carbon source
L-Malic (C)
-0.3
+0.4
N.D.
-0.7
-0.2
carbon source
D-Fructose (C)
-0.4
-0.5
N.D.
+0.2
-0.1
carbon source
D-Gluconic Acid (C)
-1.1
+0.1
N.D.
-0.0
+0.3
carbon source
Putrescine (C)
-0.7
-0.1
N.D.
-0.2
+0.3
nitrogen source
nitrate (N)
+0.2
-0.2
N.D.
-0.4
-0.2
carbon source
L-Glutamine (C)
-0.6
+0.2
N.D.
-0.2
+0.1
stress
Aluminum chloride 5 mM
-0.5
+0.2
N.D.
-0.2
-0.1
carbon source
D-Galactose (C)
-0.4
+0.2
N.D.
-0.1
-0.3
stress
Fusidic 0.08 mg/ml
-0.9
+0.2
N.D.
+0.2
+0.2
stress
Paraquat dichloride 0.032 mg/ml
-0.6
-0.1
N.D.
+0.2
+0.2
carbon source
D-Glucosamine Hydrochloride (C)
-0.6
+0.6
N.D.
+0.1
-0.2
carbon source
succinate (C)
-0.5
+0.4
N.D.
+0.1
+0.0
control
LB control
+0.5
+0.1
N.D.
-0.4
-0.1
carbon source
L-Arabinose (C)
+0.6
-0.1
N.D.
+0.1
-0.2
nitrogen source
L-Leucine (N)
+0.7
-0.0
N.D.
-0.4
+0.1
carbon source
Glycerol (C)
+0.4
-0.4
N.D.
+0.3
+0.1
carbon source
L-Lactate (C)
+0.2
-0.2
N.D.
+0.6
+0.4
carbon source
D-Lactate (C)
+1.2
-0.2
N.D.
+0.6
-0.2
carbon source
octanoate (C)
+1.1
+0.2
N.D.
+0.3
+0.2
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