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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_4952 and PfGW456L13_4953 are separated by 214 nucleotides
PfGW456L13_4953 and PfGW456L13_4954 are separated by 135 nucleotides
PfGW456L13_4954 and PfGW456L13_4955 are separated by 309 nucleotides
PfGW456L13_4955 and PfGW456L13_4956 overlap by 4 nucleotides
PfGW456L13_4952 - ribosomal subunit interface protein, putative, at 5,531,313 to 5,531,720
_4952
PfGW456L13_4953 - Glycine cleavage system transcriptional activator, at 5,531,935 to 5,532,882
_4953
PfGW456L13_4954 - L-serine ammonia-lyase (EC 4.3.1.17)
(from data)
, at 5,533,018 to 5,534,394
_4954
PfGW456L13_4955 - FIG00954638: hypothetical protein, at 5,534,704 to 5,535,018
_4955
PfGW456L13_4956 - FIG00954263: hypothetical protein, at 5,535,015 to 5,535,515
_4956
Group
Condition
PfGW456L13
_4952
PfGW456L13
_4953
PfGW456L13
_4954
PfGW456L13
_4955
PfGW456L13
_4956
nitrogen source
L-Serine (N)
-0.2
-2.2
-4.7
-0.4
-0.1
carbon source
Trisodium citrate (C)
-0.4
+0.1
+0.1
-3.5
+0.3
carbon source
L-Valine (C)
-0.1
-0.0
-0.0
-2.1
-0.1
stress
Lomefloxacin 0.0004 mM
+0.1
-0.3
+0.0
-2.0
+0.2
nitrogen source
D-Serine (N)
-0.6
-0.2
-0.9
-0.3
+0.1
nitrogen source
Putrescine (N)
-0.0
-0.1
+0.1
-1.6
-0.2
nitrogen source
L-Tryptophan (N)
+0.0
-0.1
-0.0
-1.4
-0.1
carbon source
Putrescine (C)
-0.2
-0.1
-0.4
-0.4
-0.6
nitrogen source
L-Asparagine (N)
+0.0
-0.0
-0.0
-1.5
+0.1
nitrogen source
Glycine (N)
-0.1
+0.1
-0.1
-1.2
-0.0
carbon source
L-Arabinose (C)
-0.2
+0.1
-0.2
-1.1
+0.1
carbon source
L-Histidine (C)
-0.0
-0.2
+0.1
-1.0
-0.1
carbon source
D-Mannose (C)
-0.1
-0.0
+0.1
-1.1
+0.1
control
LB
+0.0
+0.2
-0.0
-1.2
-0.1
nitrogen source
L-Proline (N)
-0.0
+0.3
+0.1
-1.3
-0.1
carbon source
D-Glucose (C)
-0.5
-0.4
+0.1
+0.4
-0.1
carbon source
D-Serine (C)
-0.2
-0.2
-0.8
+0.8
+0.0
control
LB control
-0.7
+0.3
+0.2
+0.0
-0.2
carbon source
D-Serine (C)
-0.4
-0.1
-0.9
+1.2
+0.3
control
LB control
-0.6
+0.2
+0.1
+1.0
-0.1
carbon source
L-Histidine (C)
-0.1
-0.2
-0.0
+1.1
-0.2
carbon source
D-Fructose (C)
-0.6
-0.2
+0.2
+1.3
+0.1
carbon source
L-Tryptophan (C)
-0.7
+0.2
+0.0
+1.2
+0.1
carbon source
L-Phenylalanine (C)
-0.2
-0.0
+0.1
+1.1
+0.0
carbon source
L-Lactate (C)
-0.2
-0.4
+0.1
+0.7
+0.7
carbon source
Glycerol (C)
-0.1
-0.2
+0.0
+1.9
-0.6
carbon source
succinate (C)
-0.1
-0.0
+0.1
+1.3
-0.0
carbon source
L-Arabinose (C)
-0.0
+0.2
-0.2
+0.9
+0.4
stress
Cephalothin 3 mg/ml
-0.1
+0.1
+0.2
+1.3
+0.0
carbon source
D-Lactate (C)
+0.1
-0.4
+0.1
+1.0
+0.6
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