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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_4923 and PfGW456L13_4924 are separated by 25 nucleotides
PfGW456L13_4924 and PfGW456L13_4925 are separated by 32 nucleotides
PfGW456L13_4925 and PfGW456L13_4926 are separated by 244 nucleotides
PfGW456L13_4926 and PfGW456L13_4927 are separated by 188 nucleotides
PfGW456L13_4923 - Branched-chain amino acid aminotransferase (EC 2.6.1.42), at 5,500,330 to 5,501,211
_4923
PfGW456L13_4924 - Lysine 2,3-aminomutase (EC 5.4.3.2), at 5,501,237 to 5,502,577
_4924
PfGW456L13_4925 - Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog, at 5,502,610 to 5,503,254
_4925
PfGW456L13_4926 - hypothetical protein, at 5,503,499 to 5,503,879
_4926
PfGW456L13_4927 - RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein, at 5,504,068 to 5,504,562
_4927
Group
Condition
PfGW456L13
_4923
PfGW456L13
_4924
PfGW456L13
_4925
PfGW456L13
_4926
PfGW456L13
_4927
carbon source
L-Malic (C)
-0.1
-0.1
-0.7
-0.5
-0.3
carbon source
L-Arabinose (C)
-0.3
+0.0
-0.7
-0.5
-0.1
carbon source
D-Galactose (C)
-1.0
-0.1
-1.0
+0.3
+0.3
nitrogen source
L-Aspartic Acid (N)
-0.4
-0.3
-0.4
+0.1
-0.0
carbon source
L-Lactate (C)
-0.2
-0.0
-0.8
+0.2
+0.3
carbon source
Putrescine (C)
+0.1
-0.1
-0.2
-0.9
+0.4
carbon source
D-Fructose (C)
-0.1
+0.2
-0.5
-0.4
+0.4
nitrogen source
L-Proline (N)
-0.2
-0.6
-0.3
+0.5
+0.3
carbon source
D-Alanine (C)
-0.3
+0.0
-0.4
+0.1
+0.4
nitrogen source
Glycine (N)
-0.1
-0.2
-0.4
+0.1
+0.5
carbon source
D-Lactate (C)
-0.7
-0.1
+0.4
-0.0
+0.3
carbon source
D-Gluconic Acid (C)
-0.2
+0.3
-0.8
+0.8
+0.2
carbon source
L-Arabinose (C)
+0.2
-0.3
-0.2
+0.4
+0.3
carbon source
L-Phenylalanine (C)
+0.4
+0.2
-0.0
-0.3
+0.3
stress
Vancomycin 0.125 mg/ml
-0.1
+0.4
+0.5
+0.1
-0.2
carbon source
D-Alanine (C)
-0.1
+0.2
-0.1
+0.4
+0.6
carbon source
L-Alanine (C)
+0.2
+0.3
+0.1
-0.3
+0.8
carbon source
L-Valine (C)
-0.0
+0.4
-0.0
+0.2
+0.6
carbon source
D-Mannose (C)
+0.5
+0.3
+0.0
+0.3
+0.2
stress
Chloride 400 mM
+0.4
+0.2
+0.5
+0.2
+0.0
stress
Bacitracin 1 mg/ml
-0.0
+0.2
+0.7
+0.5
-0.1
carbon source
Glycerol (C)
+0.2
+0.3
+0.8
-0.3
+0.4
carbon source
L-Valine (C)
+0.0
+0.7
+0.1
+0.2
+0.5
stress
Vancomycin 0.25 mg/ml
+0.6
+0.5
+0.2
+0.3
+0.0
carbon source
a-Ketoglutaric (C)
+0.4
+0.1
+0.8
+0.3
-0.0
stress
Aluminum chloride 5 mM
+0.6
+0.6
+0.5
-0.1
+0.1
carbon source
L-Tryptophan (C)
+0.3
+0.9
+0.8
-0.4
-0.0
stress
Vancomycin 0.5 mg/ml
+0.3
+0.6
+0.8
+0.2
-0.1
carbon source
octanoate (C)
+0.1
+1.6
+0.5
-0.2
-0.1
carbon source
L-Tryptophan (C)
+0.7
+0.8
+0.5
-0.2
+0.2
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PfGW456L13_4925
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