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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_490 and PfGW456L13_491 are separated by 146 nucleotides
PfGW456L13_491 and PfGW456L13_492 are separated by 202 nucleotides
PfGW456L13_492 and PfGW456L13_493 are separated by 125 nucleotides
PfGW456L13_493 and PfGW456L13_494 are separated by 136 nucleotides
PfGW456L13_490 - GGDEF domain protein, at 559,571 to 561,490
_490
PfGW456L13_491 - Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1), at 561,637 to 562,821
_491
PfGW456L13_492 - Sensory box/GGDEF family protein, at 563,024 to 564,013
_492
PfGW456L13_493 - response regulator, at 564,139 to 565,353
_493
PfGW456L13_494 - 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19), at 565,490 to 566,767
_494
Group
Condition
PfGW456L13
_490
PfGW456L13
_491
PfGW456L13
_492
PfGW456L13
_493
PfGW456L13
_494
nitrogen source
L-Lysine (N)
-0.1
-0.7
-0.3
-0.1
-4.3
carbon source
L-Tryptophan (C)
-0.3
-0.6
+0.0
-0.2
-1.2
nitrogen source
L-Serine (N)
-0.2
-0.3
+0.0
+0.3
-2.1
nitrogen source
L-Proline (N)
-0.2
-1.2
-0.0
-0.1
-0.3
carbon source
L-Tryptophan (C)
-0.1
-0.2
+0.1
-0.4
-1.1
nitrogen source
D-Serine (N)
-0.0
-0.0
+0.1
-0.0
-1.4
carbon source
D-Galactose (C)
-0.4
-0.2
+0.0
-0.7
-0.1
nitrogen source
D-Alanine (N)
-0.1
-0.2
-0.2
-0.0
-0.8
carbon source
D-Serine (C)
-0.0
+0.0
+0.0
+0.1
-1.3
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
-0.2
-0.8
-0.3
-0.2
+0.4
nitrogen source
L-Valine (N)
-0.3
+0.1
+0.1
-0.2
-0.7
carbon source
D-Gluconic Acid (C)
-0.0
+0.1
-0.2
-0.3
-0.5
stress
Chloride 400 mM
+0.1
-0.8
+0.0
+0.3
-0.5
carbon source
D-Lactate (C)
+0.2
-0.6
-0.1
-0.0
-0.3
carbon source
D-Serine (C)
+0.0
-0.1
+0.1
+0.3
-1.1
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
+0.1
-0.7
+0.1
-0.3
+0.2
carbon source
a-Ketoglutaric (C)
+0.2
-0.1
+0.2
-0.6
-0.1
nitrogen source
L-Threonine (N)
-0.2
-0.2
+0.3
+0.4
-0.6
carbon source
D-Galactose (C)
+0.2
-0.2
-0.5
+0.3
-0.1
carbon source
D-Lactate (C)
+0.0
-0.8
+0.1
+0.4
+0.1
carbon source
L-Arabinose (C)
+0.3
-0.3
+0.3
-0.1
-0.2
carbon source
L-Valine (C)
-0.2
+0.1
+0.0
+0.4
-0.4
stress
Thallium(I) acetate 0.004 mg/ml
+0.1
-0.5
-0.0
+0.3
+0.3
stress
Aluminum chloride 5 mM
-0.1
-0.5
+0.3
+0.1
+0.4
stress
Vancomycin 0.5 mg/ml
-0.2
+0.8
-0.0
+0.0
-0.3
carbon source
octanoate (C)
-0.1
+1.4
+0.2
-0.2
-0.8
carbon source
Putrescine (C)
+0.1
-0.0
-0.2
-0.1
+0.9
stress
Lomefloxacin 0.0004 mM
-0.2
+1.2
+0.1
-0.2
-0.1
nitrogen source
L-Arginine (N)
-0.0
-0.2
-0.1
+0.3
+1.1
stress
Paraquat dichloride 0.032 mg/ml
+0.0
-0.3
-0.0
+0.1
+2.6
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