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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_488 and PfGW456L13_489 overlap by 4 nucleotides
PfGW456L13_489 and PfGW456L13_490 are separated by 127 nucleotides
PfGW456L13_490 and PfGW456L13_491 are separated by 146 nucleotides
PfGW456L13_491 and PfGW456L13_492 are separated by 202 nucleotides
PfGW456L13_488 - Mobile element protein, at 558,305 to 558,610
_488
PfGW456L13_489 - Mobile element protein, at 558,607 to 559,443
_489
PfGW456L13_490 - GGDEF domain protein, at 559,571 to 561,490
_490
PfGW456L13_491 - Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1), at 561,637 to 562,821
_491
PfGW456L13_492 - Sensory box/GGDEF family protein, at 563,024 to 564,013
_492
Group
Condition
PfGW456L13
_488
PfGW456L13
_489
PfGW456L13
_490
PfGW456L13
_491
PfGW456L13
_492
nitrogen source
L-Proline (N)
N.D.
N.D.
-0.2
-1.2
-0.0
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
N.D.
N.D.
-0.2
-0.8
-0.3
nitrogen source
L-Lysine (N)
N.D.
N.D.
-0.1
-0.7
-0.3
carbon source
L-Tryptophan (C)
N.D.
N.D.
-0.3
-0.6
+0.0
carbon source
L-Malic (C)
N.D.
N.D.
-0.1
-0.5
-0.2
carbon source
D-Lactate (C)
N.D.
N.D.
+0.0
-0.8
+0.1
stress
Chloride 400 mM
N.D.
N.D.
+0.1
-0.8
+0.0
nitrogen source
L-Leucine (N)
N.D.
N.D.
-0.3
-0.2
-0.2
carbon source
L-Arabinose (C)
N.D.
N.D.
+0.2
-0.7
-0.1
carbon source
D-Galactose (C)
N.D.
N.D.
-0.4
-0.2
+0.0
carbon source
L-Lactate (C)
N.D.
N.D.
-0.2
-0.3
-0.1
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
N.D.
N.D.
+0.1
-0.7
+0.1
nitrogen source
Gly-DL-Asp (N)
N.D.
N.D.
-0.2
-0.2
-0.2
nitrogen source
Uridine (N)
N.D.
N.D.
-0.2
-0.3
-0.1
carbon source
D-Lactate (C)
N.D.
N.D.
+0.2
-0.6
-0.1
carbon source
D-Galactose (C)
N.D.
N.D.
+0.2
-0.2
-0.5
carbon source
L-Histidine (C)
N.D.
N.D.
+0.1
-0.3
-0.2
carbon source
a-Ketoglutaric (C)
N.D.
N.D.
-0.2
-0.4
+0.1
stress
Thallium(I) acetate 0.004 mg/ml
N.D.
N.D.
+0.1
-0.5
-0.0
stress
Aluminum chloride 5 mM
N.D.
N.D.
-0.1
-0.5
+0.3
nitrogen source
L-Threonine (N)
N.D.
N.D.
-0.2
-0.2
+0.3
stress
nitrate 200 mM
N.D.
N.D.
-0.1
-0.3
+0.2
carbon source
Tween 20 (C)
N.D.
N.D.
+0.2
-0.3
+0.1
carbon source
L-Arabinose (C)
N.D.
N.D.
+0.3
-0.3
+0.3
carbon source
D-Gluconic Acid (C)
N.D.
N.D.
+0.2
-0.3
+0.3
carbon source
a-Ketoglutaric (C)
N.D.
N.D.
+0.2
-0.1
+0.2
stress
Bacitracin 1 mg/ml
N.D.
N.D.
-0.1
+0.5
+0.1
stress
Vancomycin 0.5 mg/ml
N.D.
N.D.
-0.2
+0.8
-0.0
stress
Lomefloxacin 0.0004 mM
N.D.
N.D.
-0.2
+1.2
+0.1
carbon source
octanoate (C)
N.D.
N.D.
-0.1
+1.4
+0.2
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