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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_4890 and PfGW456L13_4891 are separated by 24 nucleotides
PfGW456L13_4891 and PfGW456L13_4892 are separated by 6 nucleotides
PfGW456L13_4892 and PfGW456L13_4893 are separated by 16 nucleotides
PfGW456L13_4893 and PfGW456L13_4894 are separated by 246 nucleotides
PfGW456L13_4890 - Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-), at 5,461,227 to 5,462,870
_4890
PfGW456L13_4891 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 5,462,895 to 5,464,673
_4891
PfGW456L13_4892 - FIG005548: transport protein, at 5,464,680 to 5,467,199
_4892
PfGW456L13_4893 - FIG002465: BNR repeat protein, at 5,467,216 to 5,468,307
_4893
PfGW456L13_4894 - FIG002188: hypothetical protein, at 5,468,554 to 5,469,912
_4894
Group
Condition
PfGW456L13
_4890
PfGW456L13
_4891
PfGW456L13
_4892
PfGW456L13
_4893
PfGW456L13
_4894
carbon source
succinate (C)
-0.2
-0.3
-0.2
-0.5
-0.2
carbon source
D-Fructose (C)
-0.5
-0.0
-0.3
-0.2
-0.1
carbon source
D-Lactate (C)
+0.1
-0.1
-0.0
-0.8
-0.1
carbon source
L-Valine (C)
-0.4
-0.0
-0.2
-0.3
-0.1
carbon source
Tween 20 (C)
-0.2
-0.0
-0.3
-0.1
-0.1
stress
Aluminum chloride 5 mM
-0.5
+0.1
-0.1
-0.0
-0.1
carbon source
D-Glucose (C)
+0.3
-0.2
-0.2
-0.2
-0.3
carbon source
Glycerol (C)
-0.3
+0.2
-0.2
-0.3
+0.1
carbon source
L-Arabinose (C)
+0.2
-0.1
-0.2
-0.5
+0.1
nitrogen source
L-Tryptophan (N)
-0.2
+0.0
+0.1
-0.3
+0.1
carbon source
D-Glucosamine Hydrochloride (C)
+0.0
+0.1
-0.1
-0.4
+0.2
nitrogen source
L-Histidine (N)
+0.1
-0.1
+0.1
-0.3
-0.1
carbon source
L-Histidine (C)
-0.2
+0.0
+0.2
-0.2
+0.1
carbon source
D-Glucosamine Hydrochloride (C)
-0.2
-0.0
+0.0
+0.2
-0.1
control
LB
+0.1
+0.1
-0.0
-0.4
+0.1
carbon source
Putrescine (C)
+0.3
+0.1
-0.2
-0.3
+0.0
nitrogen source
Putrescine (N)
-0.0
+0.1
+0.2
-0.3
+0.1
stress
Bacitracin 0.5 mg/ml
-0.3
+0.1
-0.0
+0.2
+0.0
carbon source
D-Fructose (C)
+0.2
-0.1
+0.1
-0.4
+0.2
carbon source
a-Ketoglutaric (C)
+0.4
-0.0
-0.1
-0.3
+0.1
nitrogen source
Ammonium chloride (N)
+0.3
+0.0
+0.1
-0.2
-0.1
nitrogen source
L-Proline (N)
+0.2
+0.1
+0.1
-0.2
-0.1
stress
Lomefloxacin 0.0004 mM
-0.3
+0.1
+0.2
+0.3
-0.1
carbon source
L-Lactate (C)
-0.4
-0.0
+0.2
+0.4
+0.2
carbon source
Trisodium citrate (C)
-0.3
+0.0
+0.0
+0.4
+0.2
carbon source
a-Ketoglutaric (C)
+0.0
-0.2
+0.1
+0.4
+0.0
carbon source
D-Galactose (C)
+0.3
-0.1
+0.0
+0.1
+0.2
carbon source
L-Tryptophan (C)
+0.3
+0.0
+0.1
+0.3
+0.1
carbon source
L-Tryptophan (C)
+0.1
+0.0
+0.2
+0.5
+0.2
carbon source
octanoate (C)
-0.1
-0.1
+1.3
+1.6
+1.4
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