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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_484 and PfGW456L13_485 are separated by 12 nucleotides
PfGW456L13_485 and PfGW456L13_486 are separated by 69 nucleotides
PfGW456L13_486 and PfGW456L13_487 are separated by 68 nucleotides
PfGW456L13_487 and PfGW456L13_488 are separated by 266 nucleotides
PfGW456L13_484 - Sulfate transport system permease protein CysW, at 555,004 to 555,873
_484
PfGW456L13_485 - Sulfate transport system permease protein CysT, at 555,886 to 556,704
_485
PfGW456L13_486 - Sulfate and thiosulfate binding protein CysP, at 556,774 to 557,787
_486
PfGW456L13_487 - FIG00956018: hypothetical protein, at 557,856 to 558,038
_487
PfGW456L13_488 - Mobile element protein, at 558,305 to 558,610
_488
Group
Condition
PfGW456L13
_484
PfGW456L13
_485
PfGW456L13
_486
PfGW456L13
_487
PfGW456L13
_488
carbon source
L-Glutamine (C)
-0.7
-0.3
-0.2
N.D.
N.D.
nitrogen source
L-Histidine (N)
-0.6
-0.1
-0.2
N.D.
N.D.
carbon source
succinate (C)
-0.4
-0.3
-0.1
N.D.
N.D.
carbon source
Putrescine (C)
-0.8
-0.0
+0.0
N.D.
N.D.
nitrogen source
Glycine (N)
-0.3
-0.3
-0.2
N.D.
N.D.
nitrogen source
L-Isoleucine (N)
-0.3
-0.3
-0.2
N.D.
N.D.
carbon source
L-Glutamine (C)
-0.4
-0.2
-0.2
N.D.
N.D.
nitrogen source
nitrate (N)
-0.3
-0.3
-0.1
N.D.
N.D.
nitrogen source
Ammonium chloride (N)
-0.6
+0.0
-0.1
N.D.
N.D.
nitrogen source
Cytosine (N)
-0.5
-0.1
-0.0
N.D.
N.D.
nitrogen source
L-Phenylalanine (N)
-0.5
+0.1
-0.1
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
-0.4
-0.1
+0.1
N.D.
N.D.
nitrogen source
Putrescine (N)
-0.3
-0.2
+0.1
N.D.
N.D.
nitrogen source
L-Citrulline (N)
-0.2
-0.2
+0.1
N.D.
N.D.
carbon source
Trisodium citrate (C)
+0.2
-0.3
-0.2
N.D.
N.D.
carbon source
L-Malic (C)
+0.2
-0.6
+0.1
N.D.
N.D.
carbon source
a-Ketoglutaric (C)
+0.1
-0.4
+0.0
N.D.
N.D.
stress
Thallium(I) acetate 0.004 mg/ml
-0.3
-0.1
+0.1
N.D.
N.D.
nitrogen source
D-Alanine (N)
-0.3
+0.2
-0.1
N.D.
N.D.
carbon source
L-Arabinose (C)
-0.5
+0.2
+0.2
N.D.
N.D.
carbon source
L-Tryptophan (C)
+0.1
+0.2
-0.2
N.D.
N.D.
stress
Cobalt chloride 0.16 mM
+0.2
+0.3
-0.3
N.D.
N.D.
carbon source
D-Alanine (C)
+0.3
+0.2
-0.2
N.D.
N.D.
carbon source
D-Lactate (C)
+0.4
+0.1
-0.1
N.D.
N.D.
carbon source
L-Alanine (C)
+0.3
+0.2
-0.2
N.D.
N.D.
carbon source
L-Valine (C)
+0.3
+0.2
-0.1
N.D.
N.D.
carbon source
D-Glucosamine Hydrochloride (C)
-0.1
+0.3
+0.2
N.D.
N.D.
carbon source
L-Lactate (C)
+0.8
-0.2
-0.1
N.D.
N.D.
carbon source
D-Fructose (C)
+0.5
-0.1
+0.0
N.D.
N.D.
carbon source
L-Malic (C)
+0.4
+0.2
+0.1
N.D.
N.D.
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