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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_4847 and PfGW456L13_4848 are separated by 8 nucleotides
PfGW456L13_4848 and PfGW456L13_4849 are separated by 134 nucleotides
PfGW456L13_4849 and PfGW456L13_4850 overlap by 14 nucleotides
PfGW456L13_4850 and PfGW456L13_4851 are separated by 69 nucleotides
PfGW456L13_4847 - DNA polymerase III chi subunit (EC 2.7.7.7), at 5,415,459 to 5,415,887
_4847
PfGW456L13_4848 - FIG00957284: hypothetical protein, at 5,415,896 to 5,416,303
_4848
PfGW456L13_4849 - putative membrane protein, at 5,416,438 to 5,417,205
_4849
PfGW456L13_4850 - hypothetical protein, at 5,417,192 to 5,417,332
_4850
PfGW456L13_4851 - Exodeoxyribonuclease VII large subunit (EC 3.1.11.6), at 5,417,402 to 5,418,781
_4851
Group
Condition
PfGW456L13
_4847
PfGW456L13
_4848
PfGW456L13
_4849
PfGW456L13
_4850
PfGW456L13
_4851
stress
Lomefloxacin 0.0004 mM
-0.9
N.D.
-0.3
N.D.
-2.4
carbon source
octanoate (C)
-0.8
N.D.
+0.1
N.D.
-0.7
carbon source
a-Ketoglutaric (C)
-0.5
N.D.
+0.1
N.D.
-1.1
carbon source
D-Galactose (C)
+0.2
N.D.
-0.6
N.D.
-0.9
carbon source
L-Malic (C)
-0.7
N.D.
-0.4
N.D.
-0.2
carbon source
L-Arabinose (C)
-0.9
N.D.
-0.1
N.D.
-0.3
carbon source
succinate (C)
-0.0
N.D.
-0.5
N.D.
-0.7
carbon source
D,L-Lactate (C)
-0.7
N.D.
+0.1
N.D.
-0.6
carbon source
Trisodium citrate (C)
+0.0
N.D.
-0.3
N.D.
-0.9
carbon source
L-Malic (C)
-1.1
N.D.
+0.2
N.D.
-0.0
carbon source
D-Serine (C)
-0.5
N.D.
+0.1
N.D.
-0.5
stress
D-Cycloserine 0.125 mg/ml
+0.1
N.D.
-0.2
N.D.
-0.7
carbon source
D-Lactate (C)
-0.1
N.D.
+0.1
N.D.
-0.7
stress
Cisplatin 0.0125 mg/ml
-0.4
N.D.
+0.2
N.D.
-0.4
nitrogen source
nitrate (N)
+0.2
N.D.
+0.1
N.D.
-0.7
lb
LB
-0.3
N.D.
+0.3
N.D.
-0.3
carbon source
D-Fructose (C)
+0.2
N.D.
+0.2
N.D.
-0.6
carbon source
D-Alanine (C)
-0.2
N.D.
+0.4
N.D.
-0.3
carbon source
L-Arabinose (C)
+0.6
N.D.
-0.2
N.D.
-0.5
carbon source
Glycerol (C)
+0.9
N.D.
-0.0
N.D.
-0.7
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
+0.6
N.D.
-0.3
N.D.
-0.0
carbon source
D-Fructose (C)
+0.8
N.D.
+0.1
N.D.
-0.6
carbon source
L-Glutamine (C)
+0.8
N.D.
-0.2
N.D.
+0.0
nitrogen source
D-Serine (N)
+0.6
N.D.
-0.3
N.D.
+0.3
nitrogen source
Uridine (N)
+0.5
N.D.
-0.1
N.D.
+0.3
carbon source
D-Gluconic Acid (C)
+0.9
N.D.
-0.1
N.D.
+0.1
nitrogen source
Gly-Glu (N)
+0.5
N.D.
-0.1
N.D.
+0.5
control
LB control
+0.3
N.D.
+0.1
N.D.
+0.5
nitrogen source
L-Glutamic (N)
+0.7
N.D.
+0.1
N.D.
+0.2
carbon source
D-Glucose (C)
+1.3
N.D.
+0.0
N.D.
-0.1
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