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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_4838 and PfGW456L13_4839 are separated by 172 nucleotides
PfGW456L13_4839 and PfGW456L13_4840 overlap by 8 nucleotides
PfGW456L13_4840 and PfGW456L13_4841 are separated by 247 nucleotides
PfGW456L13_4841 and PfGW456L13_4842 are separated by 5 nucleotides
PfGW456L13_4838 - DNA recombination and repair protein RecO, at 5,405,887 to 5,406,570
_4838
PfGW456L13_4839 - GTP-binding protein Era, at 5,406,743 to 5,407,645
_4839
PfGW456L13_4840 - Ribonuclease III (EC 3.1.26.3), at 5,407,638 to 5,408,264
_4840
PfGW456L13_4841 - Signal peptidase I (EC 3.4.21.89), at 5,408,512 to 5,409,366
_4841
PfGW456L13_4842 - Translation elongation factor LepA, at 5,409,372 to 5,411,171
_4842
Group
Condition
PfGW456L13
_4838
PfGW456L13
_4839
PfGW456L13
_4840
PfGW456L13
_4841
PfGW456L13
_4842
carbon source
D-Lactate (C)
-1.2
N.D.
N.D.
N.D.
-2.9
carbon source
D-Gluconic Acid (C)
-1.0
N.D.
N.D.
N.D.
-3.1
carbon source
D,L-Lactate (C)
-0.4
N.D.
N.D.
N.D.
-3.5
carbon source
L-Asparagine (C)
-0.3
N.D.
N.D.
N.D.
-3.3
carbon source
L-Lactate (C)
-0.6
N.D.
N.D.
N.D.
-2.9
carbon source
L-Histidine (C)
-0.7
N.D.
N.D.
N.D.
-2.7
carbon source
L-Tryptophan (C)
-0.3
N.D.
N.D.
N.D.
-3.1
carbon source
L-Tryptophan (C)
-0.4
N.D.
N.D.
N.D.
-2.9
carbon source
L-Arabinose (C)
-0.5
N.D.
N.D.
N.D.
-2.8
carbon source
succinate (C)
-0.4
N.D.
N.D.
N.D.
-2.9
nitrogen source
Ammonium chloride (N)
-0.2
N.D.
N.D.
N.D.
-3.1
carbon source
D-Alanine (C)
-0.7
N.D.
N.D.
N.D.
-2.5
carbon source
D-Alanine (C)
-0.3
N.D.
N.D.
N.D.
-2.7
carbon source
D-Galactose (C)
-0.1
N.D.
N.D.
N.D.
-2.8
carbon source
L-Alanine (C)
-0.4
N.D.
N.D.
N.D.
-2.6
nitrogen source
L-Asparagine (N)
-0.2
N.D.
N.D.
N.D.
-2.7
stress
Vancomycin 0.25 mg/ml
-0.8
N.D.
N.D.
N.D.
-2.1
stress
nitrate 200 mM
-0.9
N.D.
N.D.
N.D.
-1.9
carbon source
D-Glucose (C)
-0.2
N.D.
N.D.
N.D.
-2.6
nitrogen source
L-Proline (N)
-0.2
N.D.
N.D.
N.D.
-2.6
carbon source
Putrescine (C)
-0.2
N.D.
N.D.
N.D.
-2.5
carbon source
D-Galactose (C)
-0.5
N.D.
N.D.
N.D.
-2.2
stress
Fusidic 0.03 mg/ml
-0.2
N.D.
N.D.
N.D.
-2.4
nitrogen source
L-Glutamine (N)
+0.1
N.D.
N.D.
N.D.
-2.7
carbon source
L-Glutamine (C)
-0.3
N.D.
N.D.
N.D.
-2.2
stress
Vancomycin 0.5 mg/ml
-1.1
N.D.
N.D.
N.D.
-1.4
carbon source
D-Gluconic Acid (C)
-0.5
N.D.
N.D.
N.D.
-1.9
carbon source
Glycerol (C)
-0.6
N.D.
N.D.
N.D.
-1.8
carbon source
a-Ketoglutaric (C)
+0.5
N.D.
N.D.
N.D.
-2.7
stress
Lomefloxacin 0.0004 mM
-1.2
N.D.
N.D.
N.D.
+5.2
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