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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_4783 and PfGW456L13_4784 are separated by 136 nucleotides
PfGW456L13_4784 and PfGW456L13_4785 are separated by 164 nucleotides
PfGW456L13_4785 and PfGW456L13_4786 are separated by 27 nucleotides
PfGW456L13_4786 and PfGW456L13_4787 are separated by 1 nucleotides
PfGW456L13_4783 - Aliphatic amidase AmiE (EC 3.5.1.4), at 5,333,804 to 5,334,625
_4783
PfGW456L13_4784 - transcriptional regulator, LuxR family, at 5,334,762 to 5,335,550
_4784
PfGW456L13_4785 - Ferredoxin-dependent glutamate synthase (EC 1.4.7.1), at 5,335,715 to 5,337,334
_4785
PfGW456L13_4786 - Phage protein, at 5,337,362 to 5,338,870
_4786
PfGW456L13_4787 - Bactoprenol glucosyl transferase GtrB (EC 2.4.1.-), at 5,338,872 to 5,339,813
_4787
Group
Condition
PfGW456L13
_4783
PfGW456L13
_4784
PfGW456L13
_4785
PfGW456L13
_4786
PfGW456L13
_4787
stress
Lomefloxacin 0.0004 mM
-0.4
-0.3
-0.1
-0.1
-0.0
carbon source
D-Lactate (C)
+0.1
-0.1
-0.0
-0.2
-0.3
carbon source
succinate (C)
-0.4
-0.3
+0.2
+0.2
-0.1
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
-0.2
+0.2
-0.2
+0.1
-0.1
stress
Vancomycin 0.25 mg/ml
-0.2
-0.1
+0.1
+0.1
-0.0
carbon source
L-Alanine (C)
+0.3
-0.1
-0.4
+0.1
-0.1
carbon source
D-Lactate (C)
-0.4
+0.1
+0.2
+0.1
-0.2
carbon source
D-Fructose (C)
-0.2
+0.2
-0.2
+0.2
+0.0
carbon source
Putrescine (C)
-0.2
+0.0
+0.3
-0.0
-0.1
nitrogen source
L-Threonine (N)
+0.3
+0.0
-0.4
-0.1
+0.2
carbon source
a-Ketoglutaric (C)
-0.1
+0.3
+0.0
+0.0
-0.1
carbon source
L-Lactate (C)
+0.2
-0.1
+0.3
-0.0
-0.3
nitrogen source
L-Citrulline (N)
+0.4
+0.0
-0.2
-0.0
-0.0
carbon source
D-Glucosamine Hydrochloride (C)
+0.1
+0.1
-0.3
+0.1
+0.1
lb
LB
+0.3
-0.0
+0.0
+0.2
-0.1
nitrogen source
D-Serine (N)
-0.2
+0.2
-0.1
+0.0
+0.3
carbon source
L-Arabinose (C)
-0.1
+0.0
+0.4
+0.2
-0.1
nitrogen source
L-Lysine (N)
+0.1
-0.2
+0.2
+0.1
+0.2
carbon source
L-Valine (C)
+0.4
+0.1
+0.2
-0.0
-0.1
nitrogen source
Gly-Glu (N)
-0.1
+0.2
+0.3
+0.2
-0.1
carbon source
L-Tryptophan (C)
+0.3
+0.1
+0.3
-0.1
-0.1
carbon source
D-Galactose (C)
-0.1
+0.2
-0.1
+0.4
+0.1
nitrogen source
L-Leucine (N)
+0.2
-0.0
+0.2
-0.0
+0.2
nitrogen source
Gly-DL-Asp (N)
+0.5
-0.1
+0.1
-0.0
+0.2
carbon source
D-Fructose (C)
+0.0
+0.3
+0.4
+0.0
+0.0
carbon source
Glycerol (C)
+0.2
+0.4
+0.1
+0.0
-0.1
nitrogen source
D-Alanine (N)
+0.2
+0.0
+0.3
+0.0
+0.2
carbon source
L-Tryptophan (C)
+0.5
+0.4
-0.2
+0.2
+0.1
carbon source
D-Gluconic Acid (C)
+0.2
+0.3
+0.4
-0.0
+0.4
carbon source
octanoate (C)
+1.5
+1.4
-0.6
+0.1
-0.0
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