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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_471 and PfGW456L13_472 are separated by 259 nucleotides
PfGW456L13_472 and PfGW456L13_473 are separated by 134 nucleotides
PfGW456L13_473 and PfGW456L13_474 are separated by 168 nucleotides
PfGW456L13_474 and PfGW456L13_475 are separated by 106 nucleotides
PfGW456L13_471 - Ferric siderophore transport system, periplasmic binding protein TonB, at 539,047 to 539,856
_471
PfGW456L13_472 - Outer membrane receptor proteins, mostly Fe transport, at 540,116 to 542,476
_472
PfGW456L13_473 - Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17), at 542,611 to 543,531
_473
PfGW456L13_474 - LysR family transcriptional regulator PA0191, at 543,700 to 544,635
_474
PfGW456L13_475 - Alkanesulfonates-binding protein, at 544,742 to 545,755
_475
Group
Condition
PfGW456L13
_471
PfGW456L13
_472
PfGW456L13
_473
PfGW456L13
_474
PfGW456L13
_475
carbon source
D-Galactose (C)
-0.6
-0.2
+0.1
-0.5
-0.3
carbon source
a-Ketoglutaric (C)
-0.3
-0.1
-0.9
+0.0
-0.1
nitrogen source
L-Phenylalanine (N)
-0.2
-0.0
-0.1
-0.5
-0.4
nitrogen source
L-Citrulline (N)
-0.2
-0.1
+0.0
-0.5
-0.3
carbon source
octanoate (C)
-0.4
-0.0
+0.2
+0.1
-0.9
carbon source
D-Glucosamine Hydrochloride (C)
-0.3
+0.1
-0.3
-0.1
-0.3
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
-0.1
+0.0
-0.6
-0.2
+0.0
nitrogen source
Gly-DL-Asp (N)
-0.2
+0.1
-0.5
+0.3
-0.5
carbon source
D-Fructose (C)
+0.2
-0.0
-0.3
-0.8
+0.2
nitrogen source
L-Serine (N)
-0.4
-0.1
-0.2
+0.2
-0.3
nitrogen source
Gly-Glu (N)
-0.4
+0.0
+0.2
+0.1
-0.6
nitrogen source
L-Leucine (N)
-0.3
+0.0
-0.1
+0.3
-0.4
carbon source
Trisodium citrate (C)
-0.4
-0.1
+0.3
-0.2
-0.1
carbon source
D-Glucosamine Hydrochloride (C)
-0.6
-0.0
+0.2
+0.1
-0.2
carbon source
L-Valine (C)
-0.4
-0.0
-0.2
-0.1
+0.3
carbon source
L-Tryptophan (C)
+0.1
-0.1
+0.2
-0.5
-0.1
carbon source
L-Arabinose (C)
-0.4
+0.0
+0.0
-0.1
+0.4
carbon source
Putrescine (C)
+0.4
-0.2
+0.2
+0.0
-0.5
carbon source
Glycerol (C)
-0.1
+0.0
+0.3
-0.4
+0.2
nitrogen source
L-Tryptophan (N)
-0.5
+0.1
-0.2
+0.5
+0.1
nitrogen source
Ammonium chloride (N)
-0.2
+0.1
-0.0
+0.4
-0.2
carbon source
a-Ketoglutaric (C)
+0.4
-0.1
-0.2
-0.2
+0.3
carbon source
D,L-Lactate (C)
-0.1
-0.2
+0.3
+0.4
-0.1
stress
Lomefloxacin 0.0004 mM
+0.2
-0.0
+0.2
+0.5
-0.5
carbon source
L-Phenylalanine (C)
-0.3
-0.0
+0.5
+0.3
-0.1
carbon source
L-Glutamine (C)
+0.0
+0.0
+0.3
-0.4
+0.5
carbon source
D-Glucose (C)
+0.3
+0.1
+0.4
-0.1
+0.3
carbon source
D-Lactate (C)
-0.0
-0.1
+0.3
+0.0
+0.9
carbon source
Glycerol (C)
+0.2
+0.1
+0.3
+0.5
+0.3
carbon source
L-Lactate (C)
+0.2
+0.2
+0.2
+0.5
+0.5
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