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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_4639 and PfGW456L13_4640 are separated by 681 nucleotides
PfGW456L13_4640 and PfGW456L13_4641 are separated by 107 nucleotides
PfGW456L13_4641 and PfGW456L13_4642 are separated by 353 nucleotides
PfGW456L13_4642 and PfGW456L13_4643 are separated by 149 nucleotides
PfGW456L13_4639 - Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1), at 5,176,947 to 5,177,711
_4639
PfGW456L13_4640 - FIG00955308: hypothetical protein, at 5,178,393 to 5,178,602
_4640
PfGW456L13_4641 - Deoxycytidine triphosphate deaminase (EC 3.5.4.13), at 5,178,710 to 5,179,276
_4641
PfGW456L13_4642 - Cold shock protein CspA, at 5,179,630 to 5,179,839
_4642
PfGW456L13_4643 - Peptide chain release factor RF-3, at 5,179,989 to 5,180,945
_4643
Group
Condition
PfGW456L13
_4639
PfGW456L13
_4640
PfGW456L13
_4641
PfGW456L13
_4642
PfGW456L13
_4643
carbon source
Putrescine (C)
-0.4
-2.2
-1.3
-1.9
-0.2
carbon source
Trisodium citrate (C)
-0.4
-2.7
-0.4
+0.4
-0.8
carbon source
D-Fructose (C)
-0.8
+0.5
-0.5
-1.5
-0.4
carbon source
Glycerol (C)
-0.7
+0.2
-1.4
-0.7
+0.0
carbon source
D,L-Lactate (C)
+0.1
-1.8
-0.8
+0.2
-0.0
stress
Vancomycin 0.25 mg/ml
+0.2
-0.3
-1.0
-1.1
-0.1
carbon source
L-Asparagine (C)
+0.1
+0.1
-1.6
-0.7
+0.0
carbon source
D-Mannose (C)
-0.2
+0.4
-1.6
-0.5
-0.2
carbon source
L-Malic (C)
-1.5
+1.2
-0.7
-0.6
-0.5
carbon source
D-Serine (C)
-1.2
+0.7
-1.4
-0.0
+0.0
carbon source
D-Glucosamine Hydrochloride (C)
-0.5
+0.4
-1.1
-0.5
-0.1
stress
Dimethyl Sulfoxide 7.5 vol%
+0.2
+0.4
-1.7
-0.7
+0.1
carbon source
L-Alanine (C)
-0.7
-1.1
-0.4
+0.8
-0.0
carbon source
succinate (C)
-1.2
+0.0
-0.6
+0.4
-0.2
nitrogen source
NAG (N)
-1.2
+0.6
-0.6
-0.3
-0.0
stress
Vancomycin 0.5 mg/ml
-0.0
+0.5
-0.2
-1.5
+0.1
carbon source
L-Lactate (C)
-0.4
-0.3
-0.6
+0.5
-0.5
carbon source
octanoate (C)
-0.5
+1.3
-1.3
-0.0
-0.6
carbon source
L-Histidine (C)
+0.0
+0.8
-0.8
-0.9
-0.0
nitrogen source
L-Lysine (N)
-0.4
+0.7
-0.6
-0.6
+0.1
nitrogen source
L-Proline (N)
-0.5
+0.9
-1.2
+0.2
-0.1
carbon source
L-Valine (C)
+0.4
-0.6
-0.9
+0.6
-0.1
nitrogen source
D-Serine (N)
+0.6
+0.8
-0.3
-1.6
+0.1
carbon source
D-Mannose (C)
-0.4
+0.9
-0.8
+0.6
+0.0
stress
Aluminum chloride 2.5 mM
+0.1
-0.5
-0.4
-0.1
+1.3
stress
Thallium(I) acetate 0.002 mg/ml
-0.6
+0.3
-0.6
+1.3
-0.1
stress
nitrate 200 mM
+0.1
-0.1
-0.8
+1.1
+0.4
lb
LB
+1.2
+0.9
-0.8
-0.6
+0.0
stress
Lomefloxacin 0.0004 mM
-0.1
+0.2
+3.5
-3.2
+0.4
nitrogen source
nitrate (N)
+0.6
+1.4
-0.5
+0.5
+0.1
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