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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_462 and PfGW456L13_463 are separated by 21 nucleotides
PfGW456L13_463 and PfGW456L13_464 are separated by 77 nucleotides
PfGW456L13_464 and PfGW456L13_465 are separated by 178 nucleotides
PfGW456L13_465 and PfGW456L13_466 are separated by 149 nucleotides
PfGW456L13_462 - YD repeat protein, at 527,392 to 528,111
_462
PfGW456L13_463 - hypothetical protein, at 528,133 to 528,981
_463
PfGW456L13_464 - Methionine ABC transporter substrate-binding protein, at 529,059 to 529,841
_464
PfGW456L13_465 - YD repeat protein, at 530,020 to 534,609
_465
PfGW456L13_466 - hypothetical protein, at 534,759 to 535,982
_466
Group
Condition
PfGW456L13
_462
PfGW456L13
_463
PfGW456L13
_464
PfGW456L13
_465
PfGW456L13
_466
carbon source
L-Lactate (C)
-0.5
-0.0
-0.2
-0.0
-0.2
carbon source
Glycerol (C)
-0.1
-0.1
-0.4
-0.1
-0.2
stress
Fusidic 0.08 mg/ml
-0.1
-0.2
-0.0
-0.0
-0.4
carbon source
D-Galactose (C)
-0.1
-0.0
-0.2
+0.0
-0.2
carbon source
D-Fructose (C)
-0.2
-0.1
-0.2
-0.2
+0.2
carbon source
L-Histidine (C)
-0.1
-0.2
+0.1
-0.1
-0.1
carbon source
succinate (C)
-0.2
-0.1
+0.2
+0.1
-0.5
carbon source
Putrescine (C)
-0.0
+0.2
+0.0
-0.0
-0.5
carbon source
L-Malic (C)
+0.1
-0.1
-0.3
+0.1
-0.1
carbon source
octanoate (C)
-0.1
+0.2
-0.1
-0.0
-0.2
stress
Dimethyl Sulfoxide 7.5 vol%
-0.1
-0.1
+0.2
+0.0
-0.2
stress
Cephalothin 3 mg/ml
+0.1
+0.1
-0.1
+0.0
-0.3
stress
Fusidic 0.03 mg/ml
+0.1
+0.0
+0.1
+0.0
-0.3
carbon source
L-Glutamine (C)
+0.1
+0.1
+0.1
+0.0
-0.3
nitrogen source
Gly-DL-Asp (N)
+0.2
-0.3
-0.0
+0.0
+0.0
carbon source
D-Fructose (C)
+0.1
-0.0
+0.1
+0.1
-0.3
stress
Chloride 400 mM
+0.1
+0.1
-0.3
-0.0
+0.1
carbon source
Trisodium citrate (C)
+0.3
+0.1
-0.1
-0.1
-0.2
carbon source
D,L-Lactate (C)
-0.0
-0.1
+0.2
-0.1
+0.1
lb
LB
+0.1
+0.1
-0.3
-0.0
+0.2
carbon source
L-Arabinose (C)
-0.1
+0.3
+0.1
+0.0
-0.3
carbon source
D-Mannose (C)
-0.2
+0.1
+0.2
-0.0
+0.1
carbon source
L-Alanine (C)
-0.1
+0.1
+0.3
-0.1
-0.0
nitrogen source
D-Serine (N)
+0.2
-0.0
-0.2
+0.1
+0.2
carbon source
D-Glucosamine Hydrochloride (C)
+0.3
+0.1
-0.1
+0.0
+0.1
carbon source
D-Gluconic Acid (C)
-0.0
+0.2
+0.3
+0.0
-0.1
carbon source
a-Ketoglutaric (C)
-0.1
+0.1
+0.5
+0.0
-0.1
carbon source
D-Glucose (C)
+0.3
-0.1
-0.1
+0.1
+0.3
carbon source
L-Arabinose (C)
+0.0
+0.4
+0.2
+0.0
-0.1
stress
Aluminum chloride 5 mM
+0.2
+0.1
+0.3
+0.1
+0.2
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