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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_4629 and PfGW456L13_4630 are separated by 390 nucleotides
PfGW456L13_4630 and PfGW456L13_4631 are separated by 4 nucleotides
PfGW456L13_4631 and PfGW456L13_4632 are separated by 87 nucleotides
PfGW456L13_4632 and PfGW456L13_4633 are separated by 372 nucleotides
PfGW456L13_4629 - Outer membrane protein A precursor, at 5,167,147 to 5,167,635
_4629
PfGW456L13_4630 - FIG00953202: hypothetical protein, at 5,168,026 to 5,168,523
_4630
PfGW456L13_4631 - UPF0225 protein YchJ, at 5,168,528 to 5,169,004
_4631
PfGW456L13_4632 - Conserved secreted protein, at 5,169,092 to 5,169,586
_4632
PfGW456L13_4633 - Isochorismatase (EC 3.3.2.1), at 5,169,959 to 5,170,516
_4633
Group
Condition
PfGW456L13
_4629
PfGW456L13
_4630
PfGW456L13
_4631
PfGW456L13
_4632
PfGW456L13
_4633
carbon source
octanoate (C)
+0.2
-0.8
-0.6
+0.4
-0.5
carbon source
D-Fructose (C)
+0.2
+0.3
-0.8
-0.0
-0.9
carbon source
D-Gluconic Acid (C)
+0.3
-0.3
-0.2
-0.3
-0.4
carbon source
L-Malic (C)
+0.0
+0.2
+0.1
-0.3
-0.8
carbon source
L-Lactate (C)
-0.1
-0.0
-0.3
+0.3
-0.6
carbon source
a-Ketoglutaric (C)
-0.1
-0.2
-0.7
-0.0
+0.5
stress
Lomefloxacin 0.0004 mM
-0.2
-0.4
+0.0
+0.2
-0.2
stress
Thallium(I) acetate 0.004 mg/ml
-0.2
+0.1
+0.0
+0.1
-0.4
carbon source
Glycerol (C)
-0.1
+0.5
-0.3
-0.0
-0.3
nitrogen source
Uridine (N)
-0.2
-0.2
-0.1
-0.1
+0.4
carbon source
Glycerol (C)
-0.0
-0.6
-0.0
-0.1
+0.6
carbon source
L-Glutamine (C)
-0.1
+0.5
-0.3
+0.1
-0.3
nitrogen source
L-Proline (N)
-0.2
-0.2
-0.2
+0.0
+0.6
stress
Vancomycin 0.125 mg/ml
-0.1
-0.2
-0.2
+0.1
+0.6
nitrogen source
Putrescine (N)
-0.3
-0.2
-0.1
+0.1
+0.7
nitrogen source
D-Alanine (N)
-0.2
-0.1
+0.1
-0.0
+0.5
carbon source
L-Arabinose (C)
+0.1
+0.4
-0.4
+0.2
-0.0
carbon source
D-Serine (C)
-0.1
+0.3
-0.1
-0.2
+0.5
nitrogen source
L-Arginine (N)
-0.2
-0.1
-0.1
+0.2
+0.7
nitrogen source
L-Valine (N)
-0.2
+0.0
+0.3
-0.1
+0.4
carbon source
Tween 20 (C)
+0.0
+0.5
-0.1
-0.1
+0.2
carbon source
D,L-Lactate (C)
+0.0
+0.4
+0.1
-0.2
+0.3
carbon source
succinate (C)
+0.2
+0.5
-0.2
+0.1
+0.1
carbon source
casaminos (C)
+0.2
+0.5
-0.2
-0.1
+0.3
carbon source
a-Ketoglutaric (C)
+0.2
-0.1
-0.1
+0.1
+0.7
carbon source
L-Phenylalanine (C)
+0.1
+0.6
-0.1
-0.1
+0.3
carbon source
D-Gluconic Acid (C)
-0.1
+0.4
-0.0
-0.1
+0.7
carbon source
L-Valine (C)
+0.1
+0.5
-0.2
+0.0
+0.6
carbon source
Tween 20 (C)
+0.1
+0.3
+0.0
+0.2
+0.5
carbon source
Trisodium citrate (C)
+0.2
+0.7
+0.0
+0.1
+0.8
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