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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_4527 and PfGW456L13_4528 are separated by 1 nucleotides
PfGW456L13_4528 and PfGW456L13_4529 overlap by 8 nucleotides
PfGW456L13_4529 and PfGW456L13_4530 are separated by 102 nucleotides
PfGW456L13_4530 and PfGW456L13_4531 are separated by 132 nucleotides
PfGW456L13_4527 - tricarboxylate transporter component TctB
(from data)
, at 5,058,947 to 5,059,405
_4527
PfGW456L13_4528 - Tricarboxylate transport membrane protein TctA, at 5,059,407 to 5,060,921
_4528
PfGW456L13_4529 - Ammonia monooxygenase, at 5,060,914 to 5,061,954
_4529
PfGW456L13_4530 - Uracil-DNA glycosylase, family 1, at 5,062,057 to 5,062,749
_4530
PfGW456L13_4531 - Enoyl-CoA hydratase (EC 4.2.1.17), at 5,062,882 to 5,063,994
_4531
Group
Condition
PfGW456L13
_4527
PfGW456L13
_4528
PfGW456L13
_4529
PfGW456L13
_4530
PfGW456L13
_4531
carbon source
Trisodium citrate (C)
-3.3
-3.1
-0.5
-0.2
-0.3
nitrogen source
L-Leucine (N)
-0.5
-0.2
-0.2
+0.1
-0.3
carbon source
D-Mannose (C)
-0.2
-0.2
-0.5
-0.0
-0.0
carbon source
L-Arabinose (C)
-0.1
-0.0
-0.2
-0.3
-0.4
carbon source
D-Glucose (C)
-0.4
-0.2
-0.6
-0.2
+0.5
carbon source
L-Malic (C)
-0.3
+0.1
-0.3
-0.1
-0.2
carbon source
L-Valine (C)
-0.4
+0.0
-0.2
+0.1
-0.4
nitrogen source
Gly-Glu (N)
+0.1
-0.2
-0.2
+0.0
-0.6
carbon source
L-Glutamine (C)
+0.1
-0.4
-0.2
-0.4
+0.1
carbon source
casaminos (C)
-0.2
-0.1
-0.4
-0.2
+0.1
stress
Lomefloxacin 0.0004 mM
+0.4
-0.2
+0.0
-0.9
+0.0
nitrogen source
L-Phenylalanine (N)
-0.2
-0.2
-0.1
+0.2
-0.3
nitrogen source
nitrate (N)
-0.2
-0.2
+0.3
+0.0
-0.3
nitrogen source
L-Lysine (N)
-0.4
-0.2
+0.4
-0.0
-0.2
carbon source
a-Ketoglutaric (C)
-0.1
-0.2
+0.5
-0.5
+0.0
carbon source
D-Fructose (C)
-0.3
-0.0
-0.3
+0.3
+0.1
stress
Vancomycin 0.25 mg/ml
+0.2
-0.2
+0.3
-0.2
-0.2
carbon source
D-Serine (C)
-0.1
-0.1
-0.3
+0.2
+0.3
carbon source
octanoate (C)
-0.2
-0.0
-0.4
+0.3
+0.4
stress
Vancomycin 0.5 mg/ml
+0.1
-0.1
+0.5
-0.2
-0.2
carbon source
D-Lactate (C)
-0.2
-0.4
+0.2
+0.3
+0.3
carbon source
a-Ketoglutaric (C)
+0.2
+0.2
-0.3
+0.2
-0.1
nitrogen source
L-Threonine (N)
+0.2
-0.1
+0.6
-0.1
-0.2
carbon source
D-Fructose (C)
-0.2
+0.2
+0.4
+0.2
-0.2
carbon source
Putrescine (C)
+0.2
-0.3
+0.0
+0.2
+0.3
carbon source
L-Histidine (C)
+0.2
-0.1
+0.5
-0.1
+0.2
stress
Benzethonium chloride 0.0125 mM
+0.2
+0.3
+0.3
+0.2
+0.0
carbon source
L-Arabinose (C)
+0.2
+0.2
+0.4
+0.2
+0.2
carbon source
Glycerol (C)
+0.1
+0.1
+0.6
+0.1
+0.3
carbon source
D-Gluconic Acid (C)
+0.1
+0.0
+0.9
+0.0
+0.2
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