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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_448 and PfGW456L13_449 are separated by 48 nucleotides
PfGW456L13_449 and PfGW456L13_450 are separated by 23 nucleotides
PfGW456L13_450 and PfGW456L13_451 overlap by 1 nucleotides
PfGW456L13_451 and PfGW456L13_452 are separated by 129 nucleotides
PfGW456L13_448 - hypothetical protein, at 512,378 to 512,506
_448
PfGW456L13_449 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 512,555 to 513,787
_449
PfGW456L13_450 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 513,811 to 515,004
_450
PfGW456L13_451 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases, at 515,004 to 516,362
_451
PfGW456L13_452 - Methionine ABC transporter substrate-binding protein, at 516,492 to 517,301
_452
Group
Condition
PfGW456L13
_448
PfGW456L13
_449
PfGW456L13
_450
PfGW456L13
_451
PfGW456L13
_452
carbon source
D-Glucosamine Hydrochloride (C)
+0.2
-0.2
-0.7
-0.1
-0.3
carbon source
a-Ketoglutaric (C)
+0.1
-0.6
-0.2
+0.1
-0.4
carbon source
octanoate (C)
-0.2
+0.2
-0.3
-0.6
+0.1
carbon source
D-Galactose (C)
+0.1
-0.2
-0.4
-0.0
-0.0
carbon source
D-Glucose (C)
-0.0
-0.4
-0.4
+0.2
+0.1
carbon source
D-Gluconic Acid (C)
+0.2
-0.1
-0.4
-0.1
-0.0
carbon source
L-Tryptophan (C)
+0.2
+0.2
-0.3
-0.1
-0.3
carbon source
L-Lactate (C)
+0.5
-0.3
-0.3
+0.1
-0.3
carbon source
D-Gluconic Acid (C)
-0.7
-0.1
+0.5
+0.1
-0.1
carbon source
D-Lactate (C)
+0.3
-0.1
-0.3
+0.0
-0.2
carbon source
D-Alanine (C)
-0.2
-0.0
+0.3
-0.0
-0.2
nitrogen source
L-Citrulline (N)
-0.1
+0.3
-0.2
+0.0
-0.2
carbon source
L-Tryptophan (C)
-0.4
+0.3
+0.2
-0.2
-0.1
lb
LB
+0.1
-0.2
-0.3
+0.0
+0.3
carbon source
D,L-Lactate (C)
-0.2
+0.2
-0.3
-0.0
+0.1
stress
Chloride 400 mM
+0.1
+0.3
-0.1
-0.2
-0.2
carbon source
Trisodium citrate (C)
+0.6
-0.2
-0.2
-0.1
-0.0
carbon source
L-Histidine (C)
+0.0
+0.3
-0.3
-0.0
+0.2
carbon source
D-Fructose (C)
-0.4
+0.1
+0.2
+0.2
+0.1
carbon source
Glycerol (C)
+0.1
+0.2
+0.1
+0.1
-0.3
carbon source
Putrescine (C)
-0.4
+0.4
+0.6
-0.3
-0.1
nitrogen source
L-Glutamine (N)
-0.1
+0.3
+0.2
-0.2
+0.1
nitrogen source
L-Proline (N)
-0.2
+0.2
+0.2
+0.2
+0.0
carbon source
D-Fructose (C)
+0.5
+0.1
+0.0
-0.0
-0.3
carbon source
L-Malic (C)
+0.2
+0.2
-0.1
-0.1
+0.3
carbon source
D-Mannose (C)
+0.4
+0.2
+0.0
-0.1
+0.0
carbon source
D-Serine (C)
+0.3
+0.0
-0.2
+0.0
+0.3
carbon source
Tween 20 (C)
+0.3
+0.1
+0.1
-0.0
+0.2
nitrogen source
L-Tryptophan (N)
+0.2
+0.3
+0.2
+0.0
-0.0
carbon source
a-Ketoglutaric (C)
-0.2
-0.0
+0.5
+0.2
+0.3
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