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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_4451 and PfGW456L13_4452 are separated by 1730 nucleotides
PfGW456L13_4452 and PfGW456L13_4453 are separated by 138 nucleotides
PfGW456L13_4453 and PfGW456L13_4454 are separated by 158 nucleotides
PfGW456L13_4454 and PfGW456L13_4455 are separated by 67 nucleotides
PfGW456L13_4451 - ATP-dependent RNA helicase SrmB, at 4,973,129 to 4,974,469
_4451
PfGW456L13_4452 - Small-conductance mechanosensitive channel, at 4,976,200 to 4,977,498
_4452
PfGW456L13_4453 - Hydrolase, isochorismatase family, at 4,977,637 to 4,978,281
_4453
PfGW456L13_4454 - Transcriptional regulator, LysR family, at 4,978,440 to 4,979,327
_4454
PfGW456L13_4455 - MadN protein, at 4,979,395 to 4,980,261
_4455
Group
Condition
PfGW456L13
_4451
PfGW456L13
_4452
PfGW456L13
_4453
PfGW456L13
_4454
PfGW456L13
_4455
nitrogen source
D-Serine (N)
-2.2
-0.2
-0.2
-0.2
+0.1
carbon source
D-Glucose (C)
-2.4
-0.0
+0.0
-0.5
+0.3
carbon source
Putrescine (C)
-1.1
-0.3
-0.1
-0.9
-0.1
carbon source
D-Lactate (C)
-1.6
-0.3
-0.2
-0.2
-0.2
carbon source
L-Glutamine (C)
-1.5
-0.3
-0.3
-0.2
-0.0
carbon source
D-Serine (C)
-2.0
-0.3
+0.0
+0.0
+0.0
carbon source
L-Tryptophan (C)
-1.7
+0.1
-0.2
-0.4
-0.1
nitrogen source
L-Lysine (N)
-1.7
-0.3
+0.1
-0.2
-0.0
carbon source
D-Gluconic Acid (C)
-1.6
-0.3
+0.0
-0.3
-0.0
carbon source
D-Galactose (C)
-1.4
-0.1
+0.1
-0.6
-0.2
carbon source
D-Serine (C)
-1.6
-0.2
-0.0
-0.3
-0.0
carbon source
D-Fructose (C)
-1.9
-0.3
-0.2
+0.4
-0.0
carbon source
D-Fructose (C)
-1.4
-0.2
-0.1
-0.5
+0.2
carbon source
L-Histidine (C)
-1.4
-0.2
+0.1
-0.2
-0.2
carbon source
a-Ketoglutaric (C)
-1.6
+0.2
-0.2
-0.4
+0.1
stress
Vancomycin 0.5 mg/ml
-1.6
-0.1
-0.0
-0.2
+0.1
carbon source
L-Tryptophan (C)
-1.7
-0.3
+0.0
-0.1
+0.1
carbon source
L-Malic (C)
-1.7
-0.0
+0.0
-0.2
+0.1
stress
Chloride 400 mM
-1.7
-0.1
+0.0
-0.1
+0.0
carbon source
D,L-Lactate (C)
-1.4
-0.3
-0.1
+0.2
-0.2
carbon source
L-Asparagine (C)
-1.5
-0.2
+0.0
-0.3
+0.2
carbon source
L-Arabinose (C)
-1.3
-0.1
+0.1
-0.3
-0.0
stress
Bacitracin 1 mg/ml
-1.6
-0.0
+0.1
-0.2
+0.1
carbon source
L-Lactate (C)
-1.2
-0.2
+0.2
-0.3
-0.2
carbon source
octanoate (C)
-1.5
-0.7
+0.1
+0.8
-0.2
carbon source
Glycerol (C)
-1.5
-0.1
+0.0
+0.2
-0.1
carbon source
D-Gluconic Acid (C)
-1.9
-0.0
-0.0
+0.4
+0.1
stress
Aluminum chloride 5 mM
-1.4
-0.1
+0.1
+0.2
-0.2
nitrogen source
L-Asparagine (N)
-1.5
-0.1
+0.2
+0.3
-0.1
carbon source
Trisodium citrate (C)
-1.1
-0.2
+0.2
+0.3
+0.1
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