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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_442 and PfGW456L13_443 overlap by 12 nucleotides
PfGW456L13_443 and PfGW456L13_444 are separated by 302 nucleotides
PfGW456L13_444 and PfGW456L13_445 overlap by 1 nucleotides
PfGW456L13_445 and PfGW456L13_446 are separated by 4 nucleotides
PfGW456L13_442 - hypothetical protein, at 507,443 to 507,565
_442
PfGW456L13_443 - D-cysteine desulfhydrase (EC 4.4.1.15), at 507,554 to 508,546
_443
PfGW456L13_444 - Cystine ABC transporter, periplasmic cystine-binding protein FliY, at 508,849 to 509,649
_444
PfGW456L13_445 - Cystine ABC transporter, permease protein, at 509,649 to 510,314
_445
PfGW456L13_446 - Cystine ABC transporter, ATP-binding protein, at 510,319 to 511,074
_446
Group
Condition
PfGW456L13
_442
PfGW456L13
_443
PfGW456L13
_444
PfGW456L13
_445
PfGW456L13
_446
stress
Thallium(I) acetate 0.004 mg/ml
+0.1
+0.0
-0.8
-0.6
-0.7
stress
Thallium(I) acetate 0.008 mg/ml
+0.3
-0.2
-0.6
-0.6
-0.2
stress
Cobalt chloride 0.16 mM
+0.6
+0.5
-0.9
-0.7
-0.8
carbon source
D-Fructose (C)
-0.5
-0.3
-0.4
-0.1
+0.4
control
LB control
-0.0
-0.2
-0.1
+0.0
-0.5
carbon source
L-Phenylalanine (C)
-0.4
+0.0
-0.1
-0.1
-0.2
carbon source
Glycerol (C)
-0.3
+0.1
-0.0
-0.1
-0.4
carbon source
L-Histidine (C)
-0.5
+0.1
-0.0
-0.0
-0.2
carbon source
L-Malic (C)
-0.4
+0.3
+0.1
-0.1
-0.4
stress
Cisplatin 0.0125 mg/ml
+0.5
-0.1
-0.3
-0.4
-0.3
carbon source
Glycerol (C)
-0.6
+0.1
-0.0
-0.1
+0.0
carbon source
succinate (C)
-0.4
-0.3
+0.1
+0.1
-0.0
carbon source
L-Alanine (C)
-0.0
+0.2
-0.1
-0.0
-0.5
carbon source
D-Lactate (C)
-0.7
-0.2
+0.0
-0.1
+0.7
carbon source
Putrescine (C)
+0.2
+0.2
-0.4
-0.2
-0.1
stress
nitrite 10 mM
+0.1
-0.3
+0.1
-0.1
+0.2
stress
Vancomycin 0.5 mg/ml
+0.1
-0.2
-0.2
-0.1
+0.3
stress
Cephalothin 3 mg/ml
-0.1
-0.2
-0.1
+0.0
+0.4
carbon source
D-Serine (C)
+0.3
-0.1
+0.1
+0.1
-0.4
stress
Aluminum chloride 2.5 mM
+0.1
-0.4
-0.0
+0.1
+0.3
stress
Nickel (II) chloride 1 mM
+0.3
+0.5
-0.3
-0.4
-0.0
carbon source
D-Mannose (C)
-0.3
-0.1
+0.3
+0.1
+0.1
carbon source
L-Lactate (C)
+0.4
-0.2
-0.1
-0.2
+0.2
carbon source
Tween 20 (C)
-0.3
+0.2
+0.3
+0.2
+0.1
stress
D-Cycloserine 0.125 mg/ml
+0.0
-0.4
+0.2
+0.4
+0.3
carbon source
a-Ketoglutaric (C)
+0.7
+0.3
-0.0
-0.1
-0.3
carbon source
D-Glucosamine Hydrochloride (C)
+0.3
+0.2
+0.3
-0.0
-0.1
carbon source
Trisodium citrate (C)
-0.2
+0.3
+0.3
+0.2
+0.2
carbon source
octanoate (C)
+0.4
+0.5
+0.0
-0.2
+0.1
carbon source
L-Tryptophan (C)
+0.4
+0.2
-0.0
-0.0
+0.4
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