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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_4430 and PfGW456L13_4431 are separated by 16 nucleotides
PfGW456L13_4431 and PfGW456L13_4432 are separated by 9 nucleotides
PfGW456L13_4432 and PfGW456L13_4433 are separated by 144 nucleotides
PfGW456L13_4433 and PfGW456L13_4434 are separated by 5 nucleotides
PfGW456L13_4430 - Type I secretion system, outer membrane component LapE, at 4,951,818 to 4,953,134
_4430
PfGW456L13_4431 - ABC transporter, transmembrane region:ABC transporter:Peptidase C39, bacteriocin processing, at 4,953,151 to 4,955,310
_4431
PfGW456L13_4432 - HlyD family secretion protein, at 4,955,320 to 4,956,675
_4432
PfGW456L13_4433 - FIG00955751: hypothetical protein, at 4,956,820 to 4,957,416
_4433
PfGW456L13_4434 - Transcriptional regulator GbuR, at 4,957,422 to 4,958,315
_4434
Group
Condition
PfGW456L13
_4430
PfGW456L13
_4431
PfGW456L13
_4432
PfGW456L13
_4433
PfGW456L13
_4434
carbon source
D-Gluconic Acid (C)
+0.6
+0.1
+0.1
-3.1
+0.0
carbon source
Putrescine (C)
+0.2
-0.1
-0.8
-0.7
-0.6
nitrogen source
Putrescine (N)
+0.2
-0.0
-0.4
-1.1
-0.2
stress
Benzethonium chloride 0.0125 mM
+0.1
+0.0
-0.0
-1.4
-0.1
stress
Dimethyl Sulfoxide 7.5 vol%
-0.2
-0.1
-0.0
-1.1
+0.2
nitrogen source
Gly-DL-Asp (N)
+0.2
+0.0
-0.3
-1.0
-0.1
stress
Cephalothin 3 mg/ml
-0.1
-0.2
-0.3
-0.5
+0.1
carbon source
L-Glutamine (C)
+0.2
-0.1
-0.0
-1.0
-0.0
nitrogen source
D-Alanine (N)
+0.2
+0.0
-0.5
-0.6
-0.0
stress
Fusidic 0.08 mg/ml
+0.1
-0.0
-0.1
-1.0
+0.2
stress
Aluminum chloride 5 mM
+0.1
-0.0
+0.5
-1.4
+0.0
stress
Bacitracin 0.5 mg/ml
+0.0
-0.2
-0.2
-0.7
+0.3
carbon source
L-Lactate (C)
+0.3
-0.0
-0.7
+0.5
+0.0
carbon source
Glycerol (C)
+0.4
-0.1
-0.2
+0.4
-0.1
carbon source
L-Glutamine (C)
+0.0
+0.2
-0.5
+1.0
-0.3
stress
A22 0.04 mg/ml
-0.1
-0.2
-0.2
+0.7
+0.3
carbon source
D-Fructose (C)
+0.4
-0.3
+0.5
+0.6
-0.5
carbon source
D,L-Lactate (C)
+0.2
+0.2
-0.4
+0.9
-0.0
carbon source
L-Histidine (C)
+0.4
+0.1
-0.2
+0.6
+0.1
carbon source
D-Fructose (C)
-0.1
+0.0
-0.6
+1.7
+0.0
carbon source
D-Gluconic Acid (C)
+0.3
+0.0
-0.5
+1.1
+0.2
carbon source
L-Arabinose (C)
+0.0
+0.1
-0.4
+1.2
+0.1
carbon source
L-Valine (C)
+0.0
+0.0
-0.1
+1.2
-0.0
carbon source
D-Glucosamine Hydrochloride (C)
+0.3
-0.2
-0.1
+1.4
-0.0
carbon source
D-Lactate (C)
+0.4
+0.1
-0.4
+1.3
-0.1
carbon source
a-Ketoglutaric (C)
+0.3
+0.1
+0.3
+0.8
-0.0
carbon source
L-Tryptophan (C)
+0.3
-0.2
-0.2
+1.4
+0.2
carbon source
Trisodium citrate (C)
+0.2
+0.1
+0.1
+1.3
-0.3
carbon source
D-Lactate (C)
+0.3
-0.0
-0.3
+1.6
-0.1
carbon source
D-Galactose (C)
+0.4
+0.0
-0.0
+0.9
+0.3
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