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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_4425 and PfGW456L13_4426 are separated by 169 nucleotides
PfGW456L13_4426 and PfGW456L13_4427 are separated by 0 nucleotides
PfGW456L13_4427 and PfGW456L13_4428 are separated by 22 nucleotides
PfGW456L13_4428 and PfGW456L13_4429 are separated by 82 nucleotides
PfGW456L13_4425 - FIG039061: hypothetical protein related to heme utilization, at 4,938,388 to 4,938,753
_4425
PfGW456L13_4426 - hypothetical protein, at 4,938,923 to 4,939,207
_4426
PfGW456L13_4427 - T1SS associated transglutaminase-like cysteine proteinase LapP, at 4,939,208 to 4,939,717
_4427
PfGW456L13_4428 - Membrane bound c-di-GMP receptor LapD, at 4,939,740 to 4,941,686
_4428
PfGW456L13_4429 - T1SS secreted agglutinin RTX, at 4,941,769 to 4,951,188
_4429
Group
Condition
PfGW456L13
_4425
PfGW456L13
_4426
PfGW456L13
_4427
PfGW456L13
_4428
PfGW456L13
_4429
carbon source
D-Glucose (C)
-0.4
-0.3
+0.3
-0.3
-0.3
carbon source
Putrescine (C)
-0.6
-0.2
-0.0
+0.0
-0.1
carbon source
a-Ketoglutaric (C)
-0.9
-0.2
+0.4
+0.1
-0.3
carbon source
Trisodium citrate (C)
-0.1
-0.6
+0.1
-0.2
+0.0
stress
Vancomycin 0.125 mg/ml
-0.7
-0.1
+0.2
+0.1
-0.0
carbon source
L-Glutamine (C)
+0.1
-0.5
+0.2
-0.3
-0.1
stress
Vancomycin 0.25 mg/ml
-0.4
+0.2
+0.1
-0.4
+0.0
nitrogen source
nitrate (N)
-0.7
+0.1
+0.1
+0.2
-0.0
nitrogen source
D-Serine (N)
+0.3
-0.1
-0.5
+0.2
-0.0
carbon source
Glycerol (C)
-0.2
+0.2
+0.4
-0.4
-0.0
carbon source
D-Glucosamine Hydrochloride (C)
+0.3
-0.0
-0.5
+0.1
-0.0
stress
Lomefloxacin 0.0004 mM
-0.9
+0.5
+0.2
+0.2
-0.0
nitrogen source
Gly-DL-Asp (N)
+0.2
-0.4
+0.2
+0.1
-0.1
carbon source
D-Gluconic Acid (C)
+0.1
+0.0
-0.4
+0.4
-0.0
carbon source
D-Galactose (C)
+0.1
-0.2
-0.2
+0.4
-0.1
carbon source
L-Malic (C)
-0.2
-0.5
+0.2
+0.5
+0.0
carbon source
a-Ketoglutaric (C)
-0.3
-0.0
+0.4
+0.2
-0.2
carbon source
D,L-Lactate (C)
-0.1
+0.6
-0.0
-0.3
+0.0
carbon source
D-Fructose (C)
+0.2
+0.3
-0.1
-0.3
+0.1
stress
Cephalothin 3 mg/ml
-0.4
+0.1
+0.3
+0.3
+0.1
stress
Vancomycin 0.5 mg/ml
-0.4
+0.2
+0.3
+0.2
+0.0
carbon source
L-Arabinose (C)
+0.3
+0.4
-0.3
+0.1
-0.0
carbon source
succinate (C)
+0.6
+0.5
+0.1
-0.6
-0.1
nitrogen source
Gly-Glu (N)
-0.1
+0.1
+0.2
+0.5
-0.0
stress
Nickel (II) chloride 1 mM
+0.3
+0.3
+0.3
-0.1
-0.0
carbon source
L-Alanine (C)
+0.2
-0.1
+0.3
+0.4
+0.0
carbon source
D-Gluconic Acid (C)
+0.9
+0.0
-0.1
+0.1
-0.0
carbon source
L-Valine (C)
+0.2
+0.2
+0.5
+0.1
+0.0
carbon source
L-Lactate (C)
+0.4
+0.5
+0.4
+0.9
-0.1
carbon source
octanoate (C)
+0.6
+0.9
+2.3
-0.3
-0.2
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PfGW456L13_4427
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