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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_4413 and PfGW456L13_4414 overlap by 44 nucleotides
PfGW456L13_4414 and PfGW456L13_4415 are separated by 192 nucleotides
PfGW456L13_4415 and PfGW456L13_4416 are separated by 27 nucleotides
PfGW456L13_4416 and PfGW456L13_4417 are separated by 147 nucleotides
PfGW456L13_4413 - Potassium uptake protein TrkH, at 4,926,574 to 4,928,028
_4413
PfGW456L13_4414 - Transcriptional regulator, AraC family, at 4,927,985 to 4,929,013
_4414
PfGW456L13_4415 - FIG027190: Putative transmembrane protein, at 4,929,206 to 4,929,517
_4415
PfGW456L13_4416 - Metal-dependent phosphohydrolase, HD subdomain, at 4,929,545 to 4,930,135
_4416
PfGW456L13_4417 - Ser/Thr protein phosphatase family protein, UDP-2,3-diacylglucosamine hydrolase (EC 3.6.1.-) homolog, at 4,930,283 to 4,931,098
_4417
Group
Condition
PfGW456L13
_4413
PfGW456L13
_4414
PfGW456L13
_4415
PfGW456L13
_4416
PfGW456L13
_4417
carbon source
Trisodium citrate (C)
-1.0
-0.2
-0.2
-0.2
-0.2
stress
Vancomycin 0.5 mg/ml
-1.2
-0.2
+0.0
+0.1
-0.0
carbon source
D-Glucose (C)
-0.7
-0.4
-0.1
+0.1
-0.2
lb
LB
-0.8
-0.1
+0.1
-0.2
-0.3
carbon source
a-Ketoglutaric (C)
-0.3
+0.3
-0.5
+0.0
-0.5
nitrogen source
L-Valine (N)
-0.9
-0.1
-0.0
+0.1
-0.1
carbon source
L-Valine (C)
-0.8
+0.1
-0.1
-0.0
-0.2
nitrogen source
Glycine (N)
-0.5
-0.1
-0.0
-0.1
-0.2
control
LB control
-0.6
-0.0
+0.0
-0.2
-0.2
stress
Bacitracin 1 mg/ml
-1.0
+0.1
+0.0
-0.0
+0.1
nitrogen source
L-Phenylalanine (N)
-0.4
-0.3
+0.1
-0.1
-0.1
carbon source
D,L-Lactate (C)
-0.6
+0.0
+0.2
-0.1
-0.1
stress
Fusidic 0.03 mg/ml
-0.5
-0.2
+0.1
-0.0
+0.1
stress
Vancomycin 0.25 mg/ml
-0.7
+0.4
-0.1
-0.1
+0.1
carbon source
a-Ketoglutaric (C)
-0.5
+0.1
+0.1
-0.3
+0.1
carbon source
D-Fructose (C)
-0.3
-0.0
-0.1
-0.2
+0.3
carbon source
D-Galactose (C)
-0.2
-0.5
+0.4
-0.1
-0.1
carbon source
L-Valine (C)
-0.5
-0.1
+0.0
+0.0
+0.3
carbon source
Glycerol (C)
+0.3
-0.3
-0.3
-0.0
+0.1
carbon source
D-Lactate (C)
-0.2
+0.2
-0.4
+0.2
+0.1
carbon source
L-Lactate (C)
-0.2
-0.4
+0.5
+0.0
+0.2
carbon source
L-Arabinose (C)
-0.3
-0.1
+0.2
+0.1
+0.3
carbon source
L-Malic (C)
-0.4
+0.1
+0.4
-0.0
+0.1
carbon source
Putrescine (C)
-0.1
+0.2
+0.2
+0.2
-0.3
carbon source
succinate (C)
-0.4
+0.4
-0.1
+0.3
+0.1
carbon source
octanoate (C)
-0.2
+0.3
+0.3
-0.3
+0.3
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
-0.4
+0.2
+0.3
+0.1
+0.2
stress
Lomefloxacin 0.0004 mM
+0.7
-0.0
+0.3
+0.0
-0.1
carbon source
D-Gluconic Acid (C)
-0.3
+0.3
+0.4
+0.3
+0.4
stress
nitrate 200 mM
+1.2
-0.1
+0.2
-0.0
+0.0
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