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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_4402 and PfGW456L13_4403 are separated by 11 nucleotides
PfGW456L13_4403 and PfGW456L13_4404 are separated by 0 nucleotides
PfGW456L13_4404 and PfGW456L13_4405 are separated by 13 nucleotides
PfGW456L13_4405 and PfGW456L13_4406 are separated by 87 nucleotides
PfGW456L13_4402 - Segregation and condensation protein B, at 4,918,122 to 4,919,093
_4402
PfGW456L13_4403 - Segregation and condensation protein A, at 4,919,105 to 4,919,923
_4403
PfGW456L13_4404 - Hypothetical YciO protein, TsaC/YrdC paralog, at 4,919,924 to 4,920,553
_4404
PfGW456L13_4405 - COG0613, Predicted metal-dependent phosphoesterases (PHP family), at 4,920,567 to 4,921,430
_4405
PfGW456L13_4406 - Intracellular septation protein IspA, at 4,921,518 to 4,922,114
_4406
Group
Condition
PfGW456L13
_4402
PfGW456L13
_4403
PfGW456L13
_4404
PfGW456L13
_4405
PfGW456L13
_4406
carbon source
Glycerol (C)
-1.4
-0.2
+0.1
-0.1
N.D.
carbon source
L-Arabinose (C)
-1.3
-0.1
+0.0
-0.1
N.D.
stress
Cisplatin 0.0125 mg/ml
-0.8
-0.2
-0.0
-0.3
N.D.
stress
Lomefloxacin 0.0004 mM
-0.6
-0.0
-0.4
-0.2
N.D.
nitrogen source
Gly-Glu (N)
-0.7
-0.2
-0.5
+0.3
N.D.
nitrogen source
Uridine (N)
-0.3
-0.2
-0.3
-0.1
N.D.
carbon source
D-Glucosamine Hydrochloride (C)
-0.8
+0.1
-0.1
-0.0
N.D.
carbon source
L-Arabinose (C)
+0.1
-0.2
-0.6
-0.1
N.D.
nitrogen source
D-Serine (N)
-0.4
+0.3
+0.0
-0.6
N.D.
carbon source
Trisodium citrate (C)
-0.9
+0.2
+0.2
-0.1
N.D.
control
LB control
-0.8
+0.0
+0.2
+0.1
N.D.
stress
Thallium(I) acetate 0.004 mg/ml
-0.5
+0.0
-0.2
+0.2
N.D.
carbon source
succinate (C)
+0.4
-0.7
-0.1
+0.3
N.D.
nitrogen source
Gly-DL-Asp (N)
-0.1
-0.4
-0.1
+0.5
N.D.
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
-0.3
+0.1
+0.2
-0.1
N.D.
nitrogen source
L-Citrulline (N)
-0.5
+0.4
-0.0
+0.2
N.D.
carbon source
Putrescine (C)
-0.5
+0.1
+0.2
+0.3
N.D.
lb
LB
+0.3
+0.3
-0.3
-0.2
N.D.
nitrogen source
D-Alanine (N)
+0.4
+0.2
+0.0
-0.2
N.D.
nitrogen source
L-Leucine (N)
+0.4
+0.2
+0.1
-0.3
N.D.
stress
Benzethonium chloride 0.0125 mM
+0.4
+0.2
+0.1
-0.1
N.D.
carbon source
L-Malic (C)
+1.2
-0.3
-0.3
+0.1
N.D.
stress
Cephalothin 3 mg/ml
+0.7
+0.2
+0.0
-0.2
N.D.
carbon source
a-Ketoglutaric (C)
+0.2
+0.7
-0.1
-0.0
N.D.
nitrogen source
L-Asparagine (N)
+0.7
-0.0
+0.1
+0.1
N.D.
carbon source
D-Glucose (C)
+0.3
+0.1
-0.1
+0.5
N.D.
carbon source
D-Gluconic Acid (C)
+0.1
+0.5
+0.2
+0.2
N.D.
stress
Vancomycin 0.125 mg/ml
+0.6
+0.1
+0.1
+0.1
N.D.
stress
Bacitracin 1 mg/ml
+0.8
+0.3
+0.1
-0.0
N.D.
carbon source
octanoate (C)
+0.6
+0.6
+0.5
-0.4
N.D.
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