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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_4383 and PfGW456L13_4384 are separated by 17 nucleotides
PfGW456L13_4384 and PfGW456L13_4385 are separated by 27 nucleotides
PfGW456L13_4385 and PfGW456L13_4386 are separated by 52 nucleotides
PfGW456L13_4386 and PfGW456L13_4387 are separated by 45 nucleotides
PfGW456L13_4383 - Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-), at 4,898,152 to 4,899,432
_4383
PfGW456L13_4384 - Flagellar P-ring protein FlgI, at 4,899,450 to 4,900,538
_4384
PfGW456L13_4385 - Flagellar L-ring protein FlgH, at 4,900,566 to 4,901,261
_4385
PfGW456L13_4386 - Flagellar basal-body rod protein FlgG, at 4,901,314 to 4,902,099
_4386
PfGW456L13_4387 - Flagellar basal-body rod protein FlgF, at 4,902,145 to 4,902,885
_4387
Group
Condition
PfGW456L13
_4383
PfGW456L13
_4384
PfGW456L13
_4385
PfGW456L13
_4386
PfGW456L13
_4387
carbon source
D-Glucose (C)
-0.3
-1.3
+0.1
-0.4
-0.3
carbon source
D,L-Lactate (C)
+0.0
+0.1
-0.1
-1.5
+0.0
carbon source
D-Fructose (C)
-0.2
-1.3
-0.2
+0.3
-0.0
stress
Chloride 400 mM
+0.2
-0.3
-0.1
-0.2
-0.5
carbon source
D-Galactose (C)
-0.2
-0.5
-0.1
+0.2
-0.2
carbon source
L-Asparagine (C)
-0.0
-0.5
-0.3
+0.2
-0.1
carbon source
D-Glucosamine Hydrochloride (C)
+0.3
-0.9
-0.1
-0.0
-0.0
carbon source
Trisodium citrate (C)
+0.0
-0.8
+0.1
+0.2
+0.2
carbon source
D-Lactate (C)
+0.2
-0.4
-0.1
-0.3
+0.3
carbon source
L-Lactate (C)
+0.2
-0.2
-0.3
+0.5
-0.3
nitrogen source
D-Serine (N)
-0.0
-0.5
-0.2
+0.2
+0.4
carbon source
L-Malic (C)
-0.2
+0.3
+0.2
-1.0
+0.7
carbon source
L-Phenylalanine (C)
-0.3
+0.2
+0.0
-0.2
+0.3
carbon source
D-Fructose (C)
-0.1
-0.8
+0.2
+0.4
+0.5
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
+0.2
-0.3
-0.1
+0.1
+0.4
carbon source
succinate (C)
+0.5
+0.7
+0.1
-0.1
-0.8
carbon source
Glycerol (C)
-0.3
+0.5
+0.0
-0.0
+0.4
carbon source
D-Gluconic Acid (C)
+0.0
+0.4
+0.1
-0.4
+0.6
carbon source
D-Glucosamine Hydrochloride (C)
+0.1
+0.6
-0.1
+0.0
+0.3
carbon source
D-Lactate (C)
+0.0
+0.7
-0.0
+0.6
-0.3
carbon source
octanoate (C)
+0.0
+0.6
+0.5
-0.3
+0.2
nitrogen source
Gly-Glu (N)
-0.1
+0.5
+0.2
-0.0
+0.6
carbon source
a-Ketoglutaric (C)
+0.4
+0.7
-0.0
+0.2
+0.1
carbon source
a-Ketoglutaric (C)
-0.0
+0.6
+0.3
-0.0
+0.4
carbon source
L-Histidine (C)
+0.1
+0.9
+0.2
+0.2
-0.0
nitrogen source
Gly-DL-Asp (N)
+0.0
+0.2
+0.1
+0.4
+0.7
nitrogen source
L-Arginine (N)
+0.1
+0.3
+0.3
+0.6
+0.4
carbon source
L-Arabinose (C)
+0.2
+0.6
+0.6
+0.2
+0.5
carbon source
L-Arabinose (C)
+0.4
+0.6
+0.6
+0.7
+0.0
carbon source
Putrescine (C)
+0.5
+0.6
+0.4
+0.8
+0.9
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