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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_4373 and PfGW456L13_4374 are separated by 29 nucleotides
PfGW456L13_4374 and PfGW456L13_4375 overlap by 4 nucleotides
PfGW456L13_4375 and PfGW456L13_4376 overlap by 4 nucleotides
PfGW456L13_4376 and PfGW456L13_4377 overlap by 4 nucleotides
PfGW456L13_4373 - Cephalosporin hydroxylase, at 4,884,352 to 4,885,080
_4373
PfGW456L13_4374 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89), at 4,885,110 to 4,885,775
_4374
PfGW456L13_4375 - perosamine synthetase, at 4,885,772 to 4,886,893
_4375
PfGW456L13_4376 - methyltransferase, putative, at 4,886,890 to 4,888,116
_4376
PfGW456L13_4377 - dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13), at 4,888,113 to 4,888,673
_4377
Group
Condition
PfGW456L13
_4373
PfGW456L13
_4374
PfGW456L13
_4375
PfGW456L13
_4376
PfGW456L13
_4377
carbon source
D-Gluconic Acid (C)
-0.1
+0.1
-0.1
+0.0
-1.1
stress
Aluminum chloride 2.5 mM
-0.2
-0.5
+0.2
-0.2
-0.4
carbon source
L-Alanine (C)
-0.1
-0.6
-0.1
+0.0
-0.4
carbon source
L-Lactate (C)
+0.2
-0.5
-0.1
+0.1
-0.8
stress
Thallium(I) acetate 0.002 mg/ml
+0.0
-0.1
+0.2
-0.1
-0.9
carbon source
L-Asparagine (C)
-0.1
-0.3
-0.3
+0.2
-0.2
carbon source
Putrescine (C)
+0.1
+0.0
+0.1
+0.1
-0.9
nitrogen source
Gly-DL-Asp (N)
-0.1
-0.4
-0.1
-0.2
+0.3
carbon source
D-Lactate (C)
+0.1
+0.2
+0.2
+0.1
-1.0
carbon source
D-Glucose (C)
-0.1
-0.5
+0.5
-0.1
-0.1
nitrogen source
nitrate (N)
+0.1
-0.6
+0.2
+0.1
-0.2
nitrogen source
L-Arginine (N)
+0.0
-0.4
-0.1
-0.1
+0.4
stress
Benzethonium chloride 0.0125 mM
+0.1
-0.4
-0.2
-0.0
+0.3
nitrogen source
L-Threonine (N)
-0.2
-0.6
+0.2
+0.2
+0.4
carbon source
D-Galactose (C)
+0.1
-0.5
+0.0
+0.2
+0.2
carbon source
L-Malic (C)
+0.1
+0.5
-0.4
+0.1
-0.2
stress
Vancomycin 0.5 mg/ml
+0.1
+0.1
-0.1
-0.3
+0.4
carbon source
D-Glucosamine Hydrochloride (C)
+0.1
-0.1
-0.4
+0.2
+0.4
carbon source
L-Arabinose (C)
+0.1
+0.5
+0.3
+0.4
-1.1
nitrogen source
L-Alanine (N)
+0.1
-0.3
+0.3
-0.2
+0.4
carbon source
D-Fructose (C)
-0.0
-0.4
+0.1
+0.1
+0.5
carbon source
a-Ketoglutaric (C)
+0.0
+0.5
+0.3
+0.2
-0.6
nitrogen source
L-Asparagine (N)
+0.1
-0.6
+0.2
+0.2
+0.5
carbon source
D,L-Lactate (C)
+0.1
-0.0
-0.1
-0.1
+0.8
carbon source
D-Gluconic Acid (C)
-0.0
+0.6
+0.3
-0.0
-0.1
stress
Lomefloxacin 0.0004 mM
-0.1
+0.8
-0.1
-0.2
+0.5
carbon source
octanoate (C)
+0.3
+0.0
+0.2
+0.6
-0.2
carbon source
L-Phenylalanine (C)
+0.1
+0.2
+0.3
+0.2
+0.4
carbon source
L-Malic (C)
+0.0
-0.0
+0.5
-0.0
+0.7
carbon source
L-Arabinose (C)
+0.3
+0.2
+0.3
+0.0
+0.5
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