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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_4325 and PfGW456L13_4326 are separated by 12 nucleotides
PfGW456L13_4326 and PfGW456L13_4327 are separated by 29 nucleotides
PfGW456L13_4327 and PfGW456L13_4328 are separated by 48 nucleotides
PfGW456L13_4328 and PfGW456L13_4329 are separated by 46 nucleotides
PfGW456L13_4325 - Flagellar motor rotation protein MotB, at 4,836,440 to 4,837,330
_4325
PfGW456L13_4326 - Flagellar motor rotation protein MotA, at 4,837,343 to 4,838,053
_4326
PfGW456L13_4327 - Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61), at 4,838,083 to 4,839,207
_4327
PfGW456L13_4328 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 4,839,256 to 4,841,520
_4328
PfGW456L13_4329 - Chemotaxis response - phosphatase CheZ, at 4,841,567 to 4,842,355
_4329
Group
Condition
PfGW456L13
_4325
PfGW456L13
_4326
PfGW456L13
_4327
PfGW456L13
_4328
PfGW456L13
_4329
carbon source
L-Glutamine (C)
-0.3
-0.5
+0.1
+0.3
-0.5
carbon source
D-Serine (C)
+0.0
-0.2
-0.3
-0.1
-0.3
carbon source
L-Valine (C)
-0.2
-0.3
+0.0
+0.0
-0.4
carbon source
Trisodium citrate (C)
-0.1
+0.1
-0.4
-0.3
+0.0
carbon source
a-Ketoglutaric (C)
-0.2
+0.1
-0.0
-0.2
-0.4
carbon source
Putrescine (C)
-0.0
-0.4
-0.4
+0.1
+0.1
carbon source
D-Gluconic Acid (C)
+0.4
-0.4
-0.1
+0.2
-0.6
stress
Aluminum chloride 2.5 mM
-0.0
+0.0
-0.4
-0.4
+0.3
carbon source
L-Arabinose (C)
-0.0
-0.4
-0.1
+0.3
-0.2
carbon source
D-Glucose (C)
-0.3
+0.2
-0.1
+0.1
-0.2
carbon source
D-Lactate (C)
-0.0
-0.5
+0.0
+0.3
-0.1
nitrogen source
Ammonium chloride (N)
-0.1
-0.2
+0.2
+0.2
-0.4
carbon source
D-Lactate (C)
+0.3
-0.0
-0.7
+0.0
+0.0
carbon source
D-Galactose (C)
+0.3
-0.4
-0.4
+0.2
+0.0
control
LB control
-0.2
+0.2
+0.3
-0.3
-0.2
carbon source
succinate (C)
-0.0
-0.2
-0.2
+0.4
-0.1
stress
Nickel (II) chloride 1 mM
-0.3
+0.1
+0.3
-0.1
-0.1
carbon source
D-Gluconic Acid (C)
-0.1
-0.1
+0.1
-0.3
+0.5
carbon source
D,L-Lactate (C)
-0.0
+0.2
-0.2
+0.3
+0.1
carbon source
D-Galactose (C)
+0.4
-0.3
+0.0
+0.3
-0.2
carbon source
octanoate (C)
+0.4
+0.3
-0.2
+0.3
-0.4
carbon source
L-Malic (C)
+0.6
+0.0
-0.4
+0.0
+0.2
carbon source
L-Arabinose (C)
+0.1
-0.3
+0.3
+0.1
+0.4
carbon source
D-Fructose (C)
-0.1
+0.4
+0.0
+0.3
-0.1
nitrogen source
L-Phenylalanine (N)
-0.2
+0.3
+0.0
+0.1
+0.3
carbon source
Glycerol (C)
+0.3
-0.1
+0.3
+0.2
-0.1
carbon source
a-Ketoglutaric (C)
+0.4
+0.2
-0.4
+0.3
+0.2
carbon source
L-Alanine (C)
+0.0
-0.0
+0.1
+0.0
+0.6
stress
Cephalothin 3 mg/ml
+0.3
+0.1
+0.0
+0.2
+0.3
carbon source
D-Fructose (C)
+0.4
-0.1
+0.2
+0.5
-0.1
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