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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_4287 and PfGW456L13_4288 are separated by 105 nucleotides
PfGW456L13_4288 and PfGW456L13_4289 are separated by 249 nucleotides
PfGW456L13_4289 and PfGW456L13_4290 are separated by 102 nucleotides
PfGW456L13_4290 and PfGW456L13_4291 are separated by 22 nucleotides
PfGW456L13_4287 - Outer membrane porin, OprD family, at 4,802,568 to 4,803,881
_4287
PfGW456L13_4288 - Kynureninase (EC 3.7.1.3)
(from data)
, at 4,803,987 to 4,805,237
_4288
PfGW456L13_4289 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 4,805,487 to 4,805,921
_4289
PfGW456L13_4290 - benABC operon transcriptional activator BenR, at 4,806,024 to 4,807,037
_4290
PfGW456L13_4291 - L-tryptophan transporter
(from data)
, at 4,807,060 to 4,808,463
_4291
Group
Condition
PfGW456L13
_4287
PfGW456L13
_4288
PfGW456L13
_4289
PfGW456L13
_4290
PfGW456L13
_4291
carbon source
L-Tryptophan (C)
+0.1
-3.6
-2.5
-0.8
-1.0
carbon source
L-Tryptophan (C)
+1.0
-3.1
-1.9
-0.6
-1.1
nitrogen source
L-Tryptophan (N)
+0.2
-1.2
-0.9
+0.2
-0.2
carbon source
a-Ketoglutaric (C)
-0.3
-0.1
-0.8
-0.2
-0.2
carbon source
L-Arabinose (C)
-0.2
-0.0
-0.6
-0.1
-0.2
carbon source
Putrescine (C)
-0.4
+0.1
-0.2
-0.3
-0.1
carbon source
octanoate (C)
-0.1
-0.0
+0.2
-0.4
-0.5
carbon source
L-Valine (C)
-0.0
-0.3
+0.1
-0.3
-0.2
carbon source
D-Lactate (C)
-0.2
+0.0
-0.5
+0.0
+0.0
carbon source
Glycerol (C)
+0.0
+0.1
-0.2
-0.4
-0.1
carbon source
L-Arabinose (C)
-0.2
-0.1
+0.1
-0.3
-0.1
carbon source
a-Ketoglutaric (C)
+0.1
-0.0
-0.1
-0.5
+0.0
carbon source
Glycerol (C)
-0.2
-0.0
-0.4
+0.0
+0.2
carbon source
L-Malic (C)
-0.1
+0.1
-0.4
-0.1
+0.2
carbon source
D-Galactose (C)
-0.0
+0.1
-0.4
+0.1
+0.0
carbon source
L-Histidine (C)
-0.2
-0.1
-0.2
+0.1
+0.3
carbon source
L-Asparagine (C)
+0.1
+0.2
-0.4
-0.0
+0.1
nitrogen source
Ammonium chloride (N)
-0.1
-0.2
+0.4
-0.1
+0.1
carbon source
D-Alanine (C)
-0.1
+0.1
+0.2
-0.2
+0.2
nitrogen source
L-Asparagine (N)
+0.1
-0.0
+0.6
-0.1
-0.1
carbon source
D-Serine (C)
+0.0
+0.3
+0.2
-0.1
+0.1
nitrogen source
L-Threonine (N)
+0.0
-0.1
+0.6
-0.0
-0.0
carbon source
D-Glucose (C)
+0.2
-0.1
+0.4
-0.1
+0.1
nitrogen source
Gly-Glu (N)
+0.2
+0.0
+0.4
-0.1
+0.0
nitrogen source
L-Phenylalanine (N)
+0.5
-0.1
+0.1
+0.1
-0.0
nitrogen source
D-Serine (N)
+0.1
+0.0
+0.5
+0.1
-0.1
nitrogen source
nitrate (N)
+0.1
-0.2
+0.8
+0.0
-0.0
carbon source
D-Gluconic Acid (C)
+0.2
+0.2
+0.3
-0.1
+0.1
carbon source
L-Alanine (C)
+0.3
+0.1
+0.4
+0.1
+0.0
stress
Aluminum chloride 5 mM
+0.3
+0.1
+0.1
+0.2
+0.2
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