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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_4182 and PfGW456L13_4183 are separated by 124 nucleotides
PfGW456L13_4183 and PfGW456L13_4184 are separated by 65 nucleotides
PfGW456L13_4184 and PfGW456L13_4185 are separated by 164 nucleotides
PfGW456L13_4185 and PfGW456L13_4186 are separated by 63 nucleotides
PfGW456L13_4182 - Allantoicase (EC 3.5.3.4), at 4,693,667 to 4,694,662
_4182
PfGW456L13_4183 - Ureidoglycolate hydrolase (EC 3.5.3.19), at 4,694,787 to 4,695,290
_4183
PfGW456L13_4184 - FIG137887: membrane protein related to purine degradation, at 4,695,356 to 4,696,645
_4184
PfGW456L13_4185 - Xanthine permease, at 4,696,810 to 4,698,168
_4185
PfGW456L13_4186 - hypothetical protein, at 4,698,232 to 4,698,351
_4186
Group
Condition
PfGW456L13
_4182
PfGW456L13
_4183
PfGW456L13
_4184
PfGW456L13
_4185
PfGW456L13
_4186
carbon source
Putrescine (C)
-0.7
-0.7
+0.0
-0.6
N.D.
carbon source
octanoate (C)
-0.9
-0.1
-0.4
-0.4
N.D.
carbon source
L-Glutamine (C)
-0.6
-0.3
-0.4
-0.3
N.D.
carbon source
L-Lactate (C)
-0.8
-0.1
-0.2
-0.0
N.D.
carbon source
D-Gluconic Acid (C)
-0.9
-0.2
-0.2
+0.3
N.D.
control
LB control
-0.8
-0.2
+0.0
-0.0
N.D.
carbon source
D-Serine (C)
-0.5
-0.1
-0.2
-0.1
N.D.
carbon source
D-Galactose (C)
-0.5
-0.0
+0.1
-0.4
N.D.
carbon source
D-Fructose (C)
-0.3
-0.4
+0.0
-0.2
N.D.
carbon source
D-Lactate (C)
-0.2
-0.2
-0.1
-0.3
N.D.
carbon source
Trisodium citrate (C)
-0.5
-0.3
-0.2
+0.3
N.D.
carbon source
D-Glucose (C)
-0.3
-0.6
-0.0
+0.2
N.D.
stress
Vancomycin 0.5 mg/ml
-0.5
-0.1
-0.2
+0.2
N.D.
control
LB control
-0.5
-0.2
-0.2
+0.2
N.D.
nitrogen source
Putrescine (N)
-0.6
-0.2
+0.0
+0.2
N.D.
carbon source
D-Gluconic Acid (C)
-0.0
-0.4
+0.2
-0.3
N.D.
nitrogen source
Gly-DL-Asp (N)
-0.3
-0.3
+0.1
-0.1
N.D.
carbon source
L-Valine (C)
-0.6
-0.1
+0.2
+0.1
N.D.
carbon source
L-Phenylalanine (C)
-0.3
-0.2
-0.1
+0.2
N.D.
carbon source
D-Fructose (C)
-0.4
-0.1
+0.1
+0.1
N.D.
stress
Lomefloxacin 0.0004 mM
-0.2
+0.2
-0.0
-0.2
N.D.
carbon source
L-Malic (C)
-0.5
+0.2
+0.1
-0.1
N.D.
carbon source
a-Ketoglutaric (C)
-0.2
-0.3
-0.0
+0.4
N.D.
carbon source
L-Arabinose (C)
-0.9
+0.1
+0.3
+0.4
N.D.
nitrogen source
Ammonium chloride (N)
-0.4
-0.2
+0.2
+0.4
N.D.
stress
Nickel (II) chloride 1 mM
-0.2
+0.2
-0.1
+0.3
N.D.
carbon source
D-Glucosamine Hydrochloride (C)
-0.2
+0.0
+0.2
+0.3
N.D.
carbon source
D,L-Lactate (C)
+0.2
-0.2
+0.2
+0.2
N.D.
carbon source
a-Ketoglutaric (C)
+0.5
-0.1
-0.2
+0.3
N.D.
stress
A22 0.04 mg/ml
+0.3
-0.0
-0.0
+0.3
N.D.
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