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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_4086 and PfGW456L13_4087 are separated by 8 nucleotides
PfGW456L13_4087 and PfGW456L13_4088 are separated by 176 nucleotides
PfGW456L13_4088 and PfGW456L13_4089 are separated by 355 nucleotides
PfGW456L13_4089 and PfGW456L13_4090 are separated by 112 nucleotides
PfGW456L13_4086 - XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase), at 4,591,940 to 4,592,782
_4086
PfGW456L13_4087 - Guanine deaminase (EC 3.5.4.3), at 4,592,791 to 4,594,095
_4087
PfGW456L13_4088 - Transcriptional regulator, GntR family, at 4,594,272 to 4,595,036
_4088
PfGW456L13_4089 - Benzoate transport protein, at 4,595,392 to 4,596,606
_4089
PfGW456L13_4090 - FIG002060: uncharacterized protein YggL, at 4,596,719 to 4,597,063
_4090
Group
Condition
PfGW456L13
_4086
PfGW456L13
_4087
PfGW456L13
_4088
PfGW456L13
_4089
PfGW456L13
_4090
carbon source
L-Tryptophan (C)
-0.2
-0.4
-3.8
-0.1
-0.8
carbon source
L-Arabinose (C)
+0.0
-0.2
-4.3
+0.1
-0.5
carbon source
Glycerol (C)
-0.2
+0.1
-4.7
+0.1
+0.3
nitrogen source
D-Serine (N)
+0.2
-0.1
-4.2
-0.4
+0.3
carbon source
a-Ketoglutaric (C)
-0.3
+0.1
-4.0
-0.1
+0.3
carbon source
Putrescine (C)
-0.1
+0.3
-4.2
+0.3
-0.1
carbon source
L-Valine (C)
-0.1
-0.1
-3.0
-0.0
-0.7
carbon source
D-Serine (C)
-0.0
-0.0
-3.2
-0.1
-0.4
carbon source
D-Serine (C)
-0.0
-0.1
-3.1
-0.1
-0.3
carbon source
L-Tryptophan (C)
+0.0
-0.2
-2.2
+0.1
-1.0
carbon source
a-Ketoglutaric (C)
+0.1
-0.0
-2.8
+0.0
-0.3
stress
Lomefloxacin 0.0004 mM
+0.2
-0.2
-2.7
-0.1
-0.0
carbon source
succinate (C)
-0.0
-0.1
-1.7
+0.0
-0.9
nitrogen source
nitrate (N)
-0.1
-0.0
-2.3
-0.1
-0.3
carbon source
D-Alanine (C)
+0.0
+0.2
-3.1
+0.1
+0.1
nitrogen source
Putrescine (N)
-0.0
+0.1
-2.7
+0.0
+0.1
carbon source
D-Mannose (C)
-0.1
+0.1
-2.4
+0.1
-0.1
carbon source
L-Asparagine (C)
-0.1
+0.1
-2.6
+0.0
+0.2
carbon source
L-Arabinose (C)
-0.3
+0.0
-2.0
+0.1
-0.2
carbon source
D-Lactate (C)
+0.2
+0.0
-2.3
+0.1
-0.3
nitrogen source
L-Isoleucine (N)
+0.2
+0.0
-2.8
+0.2
+0.1
nitrogen source
L-Proline (N)
-0.1
+0.1
-2.6
+0.1
+0.3
carbon source
Trisodium citrate (C)
+0.1
-0.0
-2.1
+0.3
-0.6
carbon source
octanoate (C)
+0.2
+0.5
-1.9
-0.3
-0.4
carbon source
D-Alanine (C)
+0.1
+0.3
-2.1
+0.1
-0.2
carbon source
D-Fructose (C)
+0.2
+0.4
-3.3
+0.2
+0.7
carbon source
D,L-Lactate (C)
-0.4
-0.2
-1.6
+0.1
+0.4
carbon source
D-Gluconic Acid (C)
-0.0
+0.4
-1.4
+0.2
-0.7
carbon source
D-Galactose (C)
-0.1
-0.0
-2.0
-0.1
+0.8
nitrogen source
Ammonium chloride (N)
+0.2
+0.1
-1.8
+0.0
+0.7
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