Fitness for 5 genes in Pseudomonas fluorescens GW456-L13

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500 ntPfGW456L13_4061 and PfGW456L13_4062 overlap by 1 nucleotidesPfGW456L13_4062 and PfGW456L13_4063 are separated by 17 nucleotidesPfGW456L13_4063 and PfGW456L13_4064 overlap by 4 nucleotidesPfGW456L13_4064 and PfGW456L13_4065 are separated by 874 nucleotides PfGW456L13_4061 - Cytochrome c oxidase subunit CcoN (EC 1.9.3.1), at 4,558,758 to 4,560,113 _4061 PfGW456L13_4062 - Cytochrome c oxidase subunit CcoO (EC 1.9.3.1), at 4,560,113 to 4,560,721 _4062 PfGW456L13_4063 - Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1), at 4,560,739 to 4,560,912 _4063 PfGW456L13_4064 - Cytochrome c oxidase subunit CcoP (EC 1.9.3.1), at 4,560,909 to 4,561,886 _4064 PfGW456L13_4065 - Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation, at 4,562,761 to 4,564,179 _4065
Group Condition PfGW456L13_4061 PfGW456L13_4062 PfGW456L13_4063 PfGW456L13_4064 PfGW456L13_4065
carbon source Putrescine (C) -2.5 -2.4 -0.2 -3.0 -1.5
carbon source L-Alanine (C) -1.6 -1.3 -0.6 -2.2 -1.1
carbon source D-Alanine (C) -1.5 -1.6 -0.5 -1.8 -1.0
carbon source D-Alanine (C) -1.4 -1.6 -0.0 -1.9 -1.1
carbon source D-Galactose (C) -1.5 -1.5 -0.2 -1.6 -0.9
carbon source L-Alanine (C) -1.4 -1.5 -0.3 -1.4 -0.8
carbon source D-Galactose (C) -1.5 -1.4 +0.1 -0.9 -0.8
carbon source D-Lactate (C) -0.4 -0.6 +0.3 -1.5 -0.5
carbon source L-Arabinose (C) -0.5 -0.4 -1.2 -0.3 -0.0
carbon source L-Arabinose (C) -0.5 -0.5 -0.6 -0.5 -0.0
carbon source L-Asparagine (C) -0.5 -0.5 +0.1 -0.8 -0.3
carbon source D-Lactate (C) -0.5 -0.5 -0.1 -0.5 -0.4
nitrogen source Putrescine (N) -0.4 -0.2 -0.3 -0.3 -0.5
carbon source L-Asparagine (C) -0.5 -0.6 +0.0 -0.2 -0.5
nitrogen source L-Lysine (N) -0.3 -0.6 +0.0 -0.6 -0.3
stress nitrite 5 mM -0.3 -0.3 +0.2 -0.7 -0.4
carbon source L-Malic (C) -0.1 -0.5 -0.5 +0.4 +0.2
carbon source D-Serine (C) +0.4 +0.7 -0.1 +0.2 +0.6
carbon source D-Serine (C) +0.2 +0.5 -0.1 +0.6 +0.5
stress Paraquat dichloride 0.032 mg/ml +0.5 +0.3 -0.0 +0.4 +0.4
control LB control +0.2 +0.2 +0.3 +0.7 +0.6
carbon source L-Histidine (C) +0.5 +0.5 +0.3 +0.7 +0.6
carbon source L-Glutamine (C) +0.6 +0.9 -0.7 +0.8 +1.1
carbon source Tween 20 (C) +0.8 +0.6 +0.2 +0.5 +0.8
carbon source L-Tryptophan (C) +0.6 +0.8 -0.1 +1.1 +0.7
carbon source L-Tryptophan (C) +0.7 +0.6 +0.2 +1.0 +0.6
carbon source L-Glutamine (C) +0.6 +0.8 +0.2 +0.9 +0.7
carbon source D-Fructose (C) +0.7 +0.4 +0.1 +1.5 +0.5
carbon source L-Malic (C) +0.8 +1.0 +0.0 +0.9 +0.9
carbon source octanoate (C) +1.8 +1.3 +0.5 +1.8 +1.4
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