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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_4061 and PfGW456L13_4062 overlap by 1 nucleotides
PfGW456L13_4062 and PfGW456L13_4063 are separated by 17 nucleotides
PfGW456L13_4063 and PfGW456L13_4064 overlap by 4 nucleotides
PfGW456L13_4064 and PfGW456L13_4065 are separated by 874 nucleotides
PfGW456L13_4061 - Cytochrome c oxidase subunit CcoN (EC 1.9.3.1), at 4,558,758 to 4,560,113
_4061
PfGW456L13_4062 - Cytochrome c oxidase subunit CcoO (EC 1.9.3.1), at 4,560,113 to 4,560,721
_4062
PfGW456L13_4063 - Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1), at 4,560,739 to 4,560,912
_4063
PfGW456L13_4064 - Cytochrome c oxidase subunit CcoP (EC 1.9.3.1), at 4,560,909 to 4,561,886
_4064
PfGW456L13_4065 - Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation, at 4,562,761 to 4,564,179
_4065
Group
Condition
PfGW456L13
_4061
PfGW456L13
_4062
PfGW456L13
_4063
PfGW456L13
_4064
PfGW456L13
_4065
carbon source
Putrescine (C)
-2.5
-2.4
-0.2
-3.0
-1.5
carbon source
L-Alanine (C)
-1.6
-1.3
-0.6
-2.2
-1.1
carbon source
D-Alanine (C)
-1.5
-1.6
-0.5
-1.8
-1.0
carbon source
D-Alanine (C)
-1.4
-1.6
-0.0
-1.9
-1.1
carbon source
D-Galactose (C)
-1.5
-1.5
-0.2
-1.6
-0.9
carbon source
L-Alanine (C)
-1.4
-1.5
-0.3
-1.4
-0.8
carbon source
D-Galactose (C)
-1.5
-1.4
+0.1
-0.9
-0.8
carbon source
D-Lactate (C)
-0.4
-0.6
+0.3
-1.5
-0.5
carbon source
L-Arabinose (C)
-0.5
-0.4
-1.2
-0.3
-0.0
carbon source
L-Arabinose (C)
-0.5
-0.5
-0.6
-0.5
-0.0
carbon source
L-Asparagine (C)
-0.5
-0.5
+0.1
-0.8
-0.3
carbon source
D-Lactate (C)
-0.5
-0.5
-0.1
-0.5
-0.4
nitrogen source
Putrescine (N)
-0.4
-0.2
-0.3
-0.3
-0.5
carbon source
L-Asparagine (C)
-0.5
-0.6
+0.0
-0.2
-0.5
nitrogen source
L-Lysine (N)
-0.3
-0.6
+0.0
-0.6
-0.3
stress
nitrite 5 mM
-0.3
-0.3
+0.2
-0.7
-0.4
carbon source
L-Malic (C)
-0.1
-0.5
-0.5
+0.4
+0.2
carbon source
D-Serine (C)
+0.4
+0.7
-0.1
+0.2
+0.6
carbon source
D-Serine (C)
+0.2
+0.5
-0.1
+0.6
+0.5
stress
Paraquat dichloride 0.032 mg/ml
+0.5
+0.3
-0.0
+0.4
+0.4
control
LB control
+0.2
+0.2
+0.3
+0.7
+0.6
carbon source
L-Histidine (C)
+0.5
+0.5
+0.3
+0.7
+0.6
carbon source
L-Glutamine (C)
+0.6
+0.9
-0.7
+0.8
+1.1
carbon source
Tween 20 (C)
+0.8
+0.6
+0.2
+0.5
+0.8
carbon source
L-Tryptophan (C)
+0.6
+0.8
-0.1
+1.1
+0.7
carbon source
L-Tryptophan (C)
+0.7
+0.6
+0.2
+1.0
+0.6
carbon source
L-Glutamine (C)
+0.6
+0.8
+0.2
+0.9
+0.7
carbon source
D-Fructose (C)
+0.7
+0.4
+0.1
+1.5
+0.5
carbon source
L-Malic (C)
+0.8
+1.0
+0.0
+0.9
+0.9
carbon source
octanoate (C)
+1.8
+1.3
+0.5
+1.8
+1.4
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