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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_4052 and PfGW456L13_4053 are separated by 193 nucleotides
PfGW456L13_4053 and PfGW456L13_4054 are separated by 78 nucleotides
PfGW456L13_4054 and PfGW456L13_4055 are separated by 188 nucleotides
PfGW456L13_4055 and PfGW456L13_4056 are separated by 94 nucleotides
PfGW456L13_4052 - Aconitate hydratase (EC 4.2.1.3), at 4,548,621 to 4,551,362
_4052
PfGW456L13_4053 - CAAX amino terminal protease family protein, at 4,551,556 to 4,552,347
_4053
PfGW456L13_4054 - Aerotaxis receptor Aer, at 4,552,426 to 4,554,018
_4054
PfGW456L13_4055 - Predicted hydrolase of the alpha/beta-hydrolase fold, at 4,554,207 to 4,554,884
_4055
PfGW456L13_4056 - Cytochrome c oxidase subunit CcoN (EC 1.9.3.1), at 4,554,979 to 4,556,403
_4056
Group
Condition
PfGW456L13
_4052
PfGW456L13
_4053
PfGW456L13
_4054
PfGW456L13
_4055
PfGW456L13
_4056
stress
D-Cycloserine 0.125 mg/ml
-0.1
-0.3
-0.2
-0.6
-0.1
carbon source
Tween 20 (C)
+0.0
-0.4
-0.1
-0.4
+0.0
stress
nitrate 200 mM
+0.0
+0.0
-0.1
-0.6
-0.1
stress
Cephalothin 3 mg/ml
+0.0
-0.2
-0.2
-0.1
-0.3
stress
Vancomycin 0.5 mg/ml
-0.0
+0.1
-0.2
-0.6
-0.0
carbon source
D-Lactate (C)
+0.2
-0.2
-0.1
-0.2
-0.1
carbon source
L-Valine (C)
+0.1
-0.2
-0.3
-0.2
+0.1
carbon source
D-Galactose (C)
+0.1
-0.3
-0.2
+0.1
-0.1
carbon source
L-Lactate (C)
+0.0
+0.1
+0.0
-0.6
-0.0
carbon source
L-Alanine (C)
-0.2
+0.0
+0.1
-0.4
+0.2
stress
Vancomycin 0.25 mg/ml
+0.1
+0.1
-0.0
-0.5
+0.0
carbon source
D-Galactose (C)
-0.1
-0.3
+0.2
-0.1
+0.1
stress
Chloride 400 mM
+0.1
+0.0
+0.1
-0.5
+0.1
carbon source
L-Glutamine (C)
+0.1
-0.1
-0.1
-0.3
+0.2
carbon source
a-Ketoglutaric (C)
-0.0
+0.1
+0.3
-0.7
+0.3
carbon source
D-Gluconic Acid (C)
+0.3
-0.2
-0.0
-0.3
+0.1
stress
nitrite 10 mM
+0.0
+0.2
-0.1
-0.3
+0.1
lb
LB
-0.2
+0.2
-0.1
+0.2
-0.1
carbon source
D-Gluconic Acid (C)
+0.0
+0.4
-0.2
-0.1
-0.0
carbon source
D-Fructose (C)
+0.2
-0.4
+0.2
+0.1
-0.1
stress
Thallium(I) acetate 0.002 mg/ml
+0.0
+0.2
+0.3
-0.3
-0.1
carbon source
D-Glucosamine Hydrochloride (C)
+0.2
+0.2
-0.2
-0.0
+0.1
control
LB control
+0.0
-0.2
+0.1
-0.1
+0.3
control
LB control
+0.0
+0.1
+0.3
-0.2
+0.1
carbon source
Putrescine (C)
+0.4
-0.2
+0.2
-0.2
+0.2
nitrogen source
Ammonium chloride (N)
+0.2
-0.0
+0.2
+0.3
-0.1
carbon source
octanoate (C)
+0.1
+0.0
+0.4
+0.2
-0.0
carbon source
D-Fructose (C)
-0.0
+0.2
+0.2
+0.3
+0.1
nitrogen source
D-Alanine (N)
+0.2
+0.2
+0.2
+0.3
+0.1
carbon source
L-Arabinose (C)
+0.3
+0.5
+0.2
-0.1
+0.2
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