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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_4042 and PfGW456L13_4043 are separated by 122 nucleotides
PfGW456L13_4043 and PfGW456L13_4044 are separated by 183 nucleotides
PfGW456L13_4044 and PfGW456L13_4045 are separated by 215 nucleotides
PfGW456L13_4045 and PfGW456L13_4046 are separated by 99 nucleotides
PfGW456L13_4042 - FIG00953628: hypothetical protein, at 4,536,325 to 4,536,744
_4042
PfGW456L13_4043 - Universal stress protein family COG0589, at 4,536,867 to 4,537,307
_4043
PfGW456L13_4044 - COG0488: ATPase components of ABC transporters with duplicated ATPase domains, at 4,537,491 to 4,539,410
_4044
PfGW456L13_4045 - Soluble lytic murein transglycosylase precursor (EC 3.2.1.-), at 4,539,626 to 4,541,554
_4045
PfGW456L13_4046 - Lipid A export ATP-binding/permease protein MsbA, at 4,541,654 to 4,543,432
_4046
Group
Condition
PfGW456L13
_4042
PfGW456L13
_4043
PfGW456L13
_4044
PfGW456L13
_4045
PfGW456L13
_4046
carbon source
L-Malic (C)
-4.0
+0.1
-0.1
-0.0
-0.1
carbon source
a-Ketoglutaric (C)
-3.1
+0.2
+0.0
+0.1
-0.1
stress
Bacitracin 1 mg/ml
-2.6
-0.3
+0.2
+0.0
-0.1
stress
Bacitracin 0.5 mg/ml
-1.8
-0.4
+0.1
-0.1
-0.1
control
LB control
-1.9
-0.1
-0.2
+0.0
-0.0
stress
A22 0.04 mg/ml
-2.0
-0.2
+0.0
+0.1
+0.1
carbon source
L-Tryptophan (C)
-1.7
-0.7
+0.2
+0.4
-0.1
stress
Benzethonium chloride 0.0125 mM
-1.4
+0.1
-0.1
-0.5
-0.0
carbon source
L-Phenylalanine (C)
-1.8
-0.2
-0.0
+0.2
+0.0
stress
Vancomycin 0.125 mg/ml
-1.6
-0.4
+0.1
+0.1
+0.1
nitrogen source
L-Citrulline (N)
-1.4
-0.0
-0.2
+0.1
-0.1
carbon source
D-Lactate (C)
-0.4
-1.4
-0.1
+0.0
+0.2
nitrogen source
L-Proline (N)
-1.8
+0.1
+0.0
+0.1
-0.0
nitrogen source
Uridine (N)
-1.1
-0.6
+0.1
+0.1
+0.0
control
LB control
-1.8
+0.4
-0.0
+0.1
-0.0
carbon source
L-Asparagine (C)
-1.3
-0.4
+0.1
+0.2
+0.0
carbon source
L-Arabinose (C)
-1.2
-0.6
+0.2
+0.0
+0.2
nitrogen source
Gly-DL-Asp (N)
-1.0
-0.7
+0.1
+0.0
+0.2
carbon source
L-Phenylalanine (C)
-1.0
-0.6
+0.1
+0.3
+0.1
stress
Vancomycin 0.5 mg/ml
-1.0
-0.8
+0.5
+0.5
-0.3
stress
Thallium(I) acetate 0.002 mg/ml
-1.3
-0.2
+0.1
+0.2
+0.1
carbon source
D-Fructose (C)
-1.0
-0.7
+0.8
-0.2
+0.1
carbon source
L-Tryptophan (C)
-1.4
-0.1
+0.1
+0.4
-0.1
carbon source
Trisodium citrate (C)
+0.1
-1.0
+0.4
-0.3
-0.1
carbon source
a-Ketoglutaric (C)
-1.3
+0.2
+0.3
+0.1
-0.1
carbon source
D-Glucose (C)
-2.3
+0.6
+0.6
+0.1
+0.4
carbon source
Putrescine (C)
-0.7
+0.8
+0.2
+0.2
+0.3
carbon source
L-Arabinose (C)
+0.7
-0.7
+0.3
+0.2
+0.2
carbon source
octanoate (C)
-0.6
-0.6
+0.3
+2.2
+0.0
stress
Lomefloxacin 0.0004 mM
+0.6
-0.2
+0.7
+0.8
-0.3
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