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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_4038 and PfGW456L13_4039 are separated by 114 nucleotides
PfGW456L13_4039 and PfGW456L13_4040 are separated by 95 nucleotides
PfGW456L13_4040 and PfGW456L13_4041 are separated by 29 nucleotides
PfGW456L13_4041 and PfGW456L13_4042 are separated by 619 nucleotides
PfGW456L13_4038 - DNA topoisomerase I (EC 5.99.1.2), at 4,529,279 to 4,531,906
_4038
PfGW456L13_4039 - FIG00953423: hypothetical protein, at 4,532,021 to 4,532,257
_4039
PfGW456L13_4040 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 4,532,353 to 4,533,528
_4040
PfGW456L13_4041 - Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 4,533,558 to 4,535,705
_4041
PfGW456L13_4042 - FIG00953628: hypothetical protein, at 4,536,325 to 4,536,744
_4042
Group
Condition
PfGW456L13
_4038
PfGW456L13
_4039
PfGW456L13
_4040
PfGW456L13
_4041
PfGW456L13
_4042
carbon source
L-Tryptophan (C)
-3.0
+0.5
-3.1
-3.5
-1.4
carbon source
Tween 20 (C)
-1.2
+0.0
-4.4
-4.2
-0.5
carbon source
L-Tryptophan (C)
-3.4
+0.2
-0.5
-4.0
-1.7
carbon source
Trisodium citrate (C)
-4.8
-0.0
-2.1
-2.4
+0.1
carbon source
L-Histidine (C)
-3.4
+0.1
-1.9
-2.7
+0.1
carbon source
D-Glucose (C)
-3.6
-0.2
-0.4
-0.6
-2.3
carbon source
D-Fructose (C)
-4.4
+0.1
+0.5
-2.1
-1.0
control
LB control
-3.0
-0.1
-0.0
-0.8
-1.9
nitrogen source
L-Citrulline (N)
-2.6
+0.1
-0.8
-1.0
-1.4
carbon source
L-Glutamine (C)
-3.6
+0.0
-0.1
-2.3
+0.4
carbon source
L-Valine (C)
-1.7
-0.0
-0.8
-3.1
+0.1
control
LB control
-2.1
-0.1
-1.4
-1.1
-0.5
control
LB control
-1.9
-0.1
-0.8
-0.4
-1.8
carbon source
a-Ketoglutaric (C)
-1.6
-0.1
+1.2
-1.2
-3.1
nitrogen source
L-Lysine (N)
-3.8
-0.1
+0.1
-0.6
-0.3
carbon source
Putrescine (C)
-0.5
+0.6
-0.9
-2.9
-0.7
carbon source
Glycerol (C)
-0.5
+0.2
-0.5
-2.9
-0.4
stress
Bacitracin 1 mg/ml
-3.7
-0.2
+1.1
+1.3
-2.6
carbon source
octanoate (C)
-2.0
+2.3
-2.7
-1.0
-0.6
nitrogen source
L-Asparagine (N)
-3.1
+0.1
-0.6
+0.6
-1.0
carbon source
D-Serine (C)
-0.9
+0.5
-1.1
-2.4
+0.2
carbon source
L-Arabinose (C)
-1.7
+0.3
-0.9
-2.0
+0.7
stress
Bacitracin 0.5 mg/ml
-2.5
-0.2
+1.1
+0.5
-1.8
stress
Vancomycin 0.5 mg/ml
-2.8
-0.1
+1.0
+0.5
-1.0
stress
Vancomycin 0.25 mg/ml
-4.1
+0.1
+1.2
+1.3
-0.1
carbon source
D-Gluconic Acid (C)
-3.6
+0.4
+0.8
+0.8
-0.1
stress
Vancomycin 0.125 mg/ml
-2.4
+0.2
+1.1
+1.1
-1.6
carbon source
a-Ketoglutaric (C)
-1.9
+0.2
+1.1
+0.9
-1.3
stress
D-Cycloserine 0.125 mg/ml
-2.3
-0.1
+1.1
+1.1
-0.2
stress
Paraquat dichloride 0.032 mg/ml
+2.1
+0.1
-0.2
-1.4
-0.8
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