Fitness for 5 genes in Pseudomonas fluorescens GW456-L13

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500 ntPfGW456L13_3986 and PfGW456L13_3987 are separated by 218 nucleotidesPfGW456L13_3987 and PfGW456L13_3988 are separated by 54 nucleotidesPfGW456L13_3988 and PfGW456L13_3989 are separated by 1031 nucleotidesPfGW456L13_3989 and PfGW456L13_3990 are separated by 1011 nucleotides PfGW456L13_3986 - Shufflon-specific DNA recombinase, at 4,471,841 to 4,472,137 _3986 PfGW456L13_3987 - tRNA dihydrouridine synthase A, at 4,472,356 to 4,473,249 _3987 PfGW456L13_3988 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 4,473,304 to 4,474,098 _3988 PfGW456L13_3989 - FIG00964275: hypothetical protein, at 4,475,130 to 4,475,402 _3989 PfGW456L13_3990 - Response regulator receiver domain protein (CheY), at 4,476,414 to 4,476,896 _3990
Group Condition PfGW456L13_3986 PfGW456L13_3987 PfGW456L13_3988 PfGW456L13_3989 PfGW456L13_3990
stress Lomefloxacin 0.0004 mM -0.2 -0.4 +0.0 -1.7 -2.4
nitrogen source L-Glutamine (N) +0.1 +0.0 +0.1 -1.2 -2.0
nitrogen source L-Glutamic (N) +0.1 -0.0 +0.0 -1.4 -1.6
stress Vancomycin 0.5 mg/ml +0.4 -0.5 +0.4 -1.5 -1.4
nitrogen source L-Asparagine (N) +0.1 -0.1 -0.1 -1.0 -1.2
carbon source D-Glucose (C) +0.4 -0.1 -0.1 -0.9 -1.6
carbon source D-Fructose (C) -0.4 +0.2 +0.1 -1.1 -1.0
nitrogen source Ammonium chloride (N) +0.1 -0.1 +0.1 -1.3 -0.9
nitrogen source L-Proline (N) +0.3 +0.1 -0.0 -0.7 -1.6
carbon source L-Glutamine (C) +0.3 +0.0 +0.1 -0.8 -1.2
stress KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x -0.1 -0.1 -0.7 +1.4 +0.5
lb LB -0.8 -0.0 +0.2 +1.0 +0.8
carbon source D-Gluconic Acid (C) -0.3 -0.3 +0.2 +0.8 +0.9
stress nitrite 10 mM -0.2 +0.0 +0.0 +0.7 +1.5
carbon source L-Valine (C) +0.2 -0.1 +0.5 +0.2 +1.6
stress Thallium(I) acetate 0.002 mg/ml -0.0 +0.0 -0.0 +0.9 +1.7
carbon source Trisodium citrate (C) +0.2 -0.1 +0.3 +0.7 +1.5
stress Bacitracin 0.5 mg/ml +0.4 -0.2 -0.1 +1.0 +1.7
stress Fusidic 0.03 mg/ml -0.1 -0.1 -0.0 +1.0 +2.1
stress D-Cycloserine 0.125 mg/ml +0.3 -0.1 +0.0 +0.8 +1.8
stress nitrate 200 mM +0.5 -0.2 +0.4 +1.1 +1.6
stress nitrite 5 mM +0.1 -0.1 -0.0 +1.6 +2.1
stress Aluminum chloride 5 mM +0.0 -0.0 +0.2 +1.6 +1.7
stress Paraquat dichloride 0.032 mg/ml -0.0 -0.0 +0.2 +1.3 +2.3
carbon source octanoate (C) -0.3 +0.7 -0.0 +2.5 +1.1
stress Cephalothin 3 mg/ml +0.3 +0.0 +0.3 +0.8 +2.7
carbon source L-Valine (C) +0.2 +0.1 +0.4 +2.0 +1.5
lb LB +0.2 +0.2 +0.0 +1.6 +2.5
stress Chloride 400 mM +0.5 -0.0 +0.4 +1.9 +2.2
stress Aluminum chloride 2.5 mM +0.2 +0.3 +0.5 +1.7 +2.7
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