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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_3956 and PfGW456L13_3957 are separated by 302 nucleotides
PfGW456L13_3957 and PfGW456L13_3958 overlap by 11 nucleotides
PfGW456L13_3958 and PfGW456L13_3959 are separated by 117 nucleotides
PfGW456L13_3959 and PfGW456L13_3960 are separated by 335 nucleotides
PfGW456L13_3956 - Glutamyl-tRNA synthetase (EC 6.1.1.17), at 4,437,624 to 4,439,033
_3956
PfGW456L13_3957 - Membrane fusion component of tripartite multidrug resistance system, at 4,439,336 to 4,440,424
_3957
PfGW456L13_3958 - Inner membrane component of tripartite multidrug resistance system, at 4,440,414 to 4,441,964
_3958
PfGW456L13_3959 - Excinuclease ABC subunit B, at 4,442,082 to 4,444,097
_3959
PfGW456L13_3960 - Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57), at 4,444,433 to 4,445,629
_3960
Group
Condition
PfGW456L13
_3956
PfGW456L13
_3957
PfGW456L13
_3958
PfGW456L13
_3959
PfGW456L13
_3960
carbon source
a-Ketoglutaric (C)
N.D.
-0.5
+0.1
+0.1
-5.1
carbon source
D-Glucose (C)
N.D.
-0.4
+0.1
+0.1
-4.9
carbon source
Glycerol (C)
N.D.
-0.2
-0.1
+0.0
-4.4
carbon source
Trisodium citrate (C)
N.D.
+0.0
-0.0
+0.1
-4.6
carbon source
L-Histidine (C)
N.D.
-0.1
-0.1
-0.1
-4.2
carbon source
D,L-Lactate (C)
N.D.
-0.3
-0.0
+0.1
-4.1
carbon source
D-Fructose (C)
N.D.
-0.2
+0.0
-0.2
-3.9
carbon source
D-Lactate (C)
N.D.
+0.2
-0.0
+0.1
-4.6
nitrogen source
D-Serine (N)
N.D.
+0.3
+0.1
-0.1
-4.5
carbon source
Glycerol (C)
N.D.
-0.2
-0.3
-0.0
-3.7
nitrogen source
L-Histidine (N)
N.D.
-0.1
+0.1
+0.1
-4.2
carbon source
L-Malic (C)
N.D.
-0.4
-0.0
+0.0
-3.8
carbon source
a-Ketoglutaric (C)
N.D.
-0.4
-0.1
+0.3
-3.9
carbon source
D-Gluconic Acid (C)
N.D.
+0.1
+0.0
+0.1
-4.3
carbon source
L-Tryptophan (C)
N.D.
+0.1
-0.1
-0.1
-4.1
carbon source
L-Lactate (C)
N.D.
-0.2
+0.0
-0.1
-3.9
nitrogen source
L-Glutamine (N)
N.D.
-0.2
+0.1
+0.0
-4.1
carbon source
D-Gluconic Acid (C)
N.D.
-0.0
-0.2
+0.2
-4.0
carbon source
L-Histidine (C)
N.D.
+0.1
+0.0
-0.1
-4.1
nitrogen source
Ammonium chloride (N)
N.D.
-0.0
+0.0
+0.0
-3.8
carbon source
L-Valine (C)
N.D.
+0.2
+0.1
-0.0
-4.1
carbon source
D-Galactose (C)
N.D.
-0.1
+0.0
+0.5
-4.2
carbon source
D-Lactate (C)
N.D.
-0.1
+0.1
-0.2
-3.5
carbon source
succinate (C)
N.D.
-0.1
-0.1
+0.0
-3.5
carbon source
L-Glutamine (C)
N.D.
+0.1
+0.1
-0.0
-3.6
nitrogen source
D-Alanine (N)
N.D.
-0.1
+0.1
+0.2
-3.4
nitrogen source
Putrescine (N)
N.D.
-0.2
+0.3
+0.1
-3.4
carbon source
L-Tryptophan (C)
N.D.
-0.0
+0.2
+0.2
-3.5
carbon source
D-Galactose (C)
N.D.
-0.1
+0.1
+0.6
-3.2
carbon source
Putrescine (C)
N.D.
+0.2
+0.3
+0.3
-3.2
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