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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_3887 and PfGW456L13_3888 are separated by 18 nucleotides
PfGW456L13_3888 and PfGW456L13_3889 are separated by 74 nucleotides
PfGW456L13_3889 and PfGW456L13_3890 are separated by 205 nucleotides
PfGW456L13_3890 and PfGW456L13_3891 are separated by 570 nucleotides
PfGW456L13_3887 - cell morphology protein, at 4,364,212 to 4,364,886
_3887
PfGW456L13_3888 - Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-), at 4,364,905 to 4,366,314
_3888
PfGW456L13_3889 - Alginate biosynthesis protein AlgX, at 4,366,389 to 4,367,468
_3889
PfGW456L13_3890 - hypothetical protein, at 4,367,674 to 4,367,889
_3890
PfGW456L13_3891 - hypothetical protein, at 4,368,460 to 4,368,588
_3891
Group
Condition
PfGW456L13
_3887
PfGW456L13
_3888
PfGW456L13
_3889
PfGW456L13
_3890
PfGW456L13
_3891
carbon source
D,L-Lactate (C)
-0.1
+0.1
-0.5
-0.1
-1.8
stress
Bacitracin 1 mg/ml
-0.4
-0.1
-0.0
-0.2
-0.9
stress
Lomefloxacin 0.0004 mM
-0.2
-0.0
-0.1
-0.0
-1.1
carbon source
L-Valine (C)
-1.0
+0.2
-0.2
-0.3
-0.1
carbon source
D-Glucosamine Hydrochloride (C)
-0.4
+0.0
-0.0
-0.1
-0.9
stress
Fusidic 0.08 mg/ml
-0.1
+0.1
-0.2
-0.2
-0.8
carbon source
D-Fructose (C)
-1.2
-0.1
+0.3
+0.3
-0.4
stress
sodium fluoride 12.5 mM
-0.0
-0.1
+0.2
-0.3
-0.7
carbon source
L-Alanine (C)
+0.4
+0.1
+0.0
-0.2
-0.8
nitrogen source
Cytosine (N)
+0.4
-0.0
+0.2
-0.3
-0.8
stress
Aluminum chloride 5 mM
-0.6
-0.1
-0.3
+0.1
+0.4
carbon source
D-Galactose (C)
-0.3
+0.2
+0.3
-0.3
-0.5
carbon source
D-Gluconic Acid (C)
+0.6
-0.1
+0.2
-0.0
-1.2
carbon source
a-Ketoglutaric (C)
-0.0
+0.1
+0.3
+0.5
-1.2
carbon source
Glycerol (C)
-0.3
+0.1
+0.2
+0.3
-0.7
carbon source
L-Tryptophan (C)
-1.0
+0.1
-0.1
-0.2
+0.8
stress
Vancomycin 0.25 mg/ml
+0.3
+0.2
-0.4
+0.3
-0.6
carbon source
L-Malic (C)
-1.3
+0.3
+0.1
+0.6
+0.1
carbon source
D-Alanine (C)
-0.7
+0.1
-0.1
+0.1
+0.3
nitrogen source
L-Asparagine (N)
+0.5
+0.0
-0.4
+0.2
-0.4
nitrogen source
NAG (N)
+0.5
+0.0
+0.2
-0.1
-0.6
carbon source
octanoate (C)
-0.0
-0.2
+0.4
-0.7
+0.5
carbon source
succinate (C)
+0.5
+0.3
+0.2
+0.5
-1.3
carbon source
D-Lactate (C)
-0.4
+0.1
+0.5
-0.5
+0.7
carbon source
D-Glucosamine Hydrochloride (C)
-0.5
+0.1
+0.2
+0.2
+0.5
carbon source
D-Gluconic Acid (C)
+0.4
+0.1
+0.5
+0.1
-0.4
carbon source
D-Glucose (C)
-0.5
+0.3
+0.6
-0.1
+0.5
nitrogen source
L-Proline (N)
+0.8
-0.0
+0.1
+0.3
-0.2
carbon source
D-Serine (C)
+0.2
+0.3
+0.6
-0.2
+0.0
lb
LB
+0.5
+0.1
-0.1
+0.5
+0.1
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