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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_3867 and PfGW456L13_3868 are separated by 367 nucleotides
PfGW456L13_3868 and PfGW456L13_3869 overlap by 36 nucleotides
PfGW456L13_3869 and PfGW456L13_3870 are separated by 151 nucleotides
PfGW456L13_3870 and PfGW456L13_3871 are separated by 329 nucleotides
PfGW456L13_3867 - Multimeric flavodoxin WrbA, at 4,329,529 to 4,330,095
_3867
PfGW456L13_3868 - Disease resistance protein / Tetratricopeptide repeat-containing protein, at 4,330,463 to 4,333,267
_3868
PfGW456L13_3869 - Disease resistance protein / Tetratricopeptide repeat-containing protein, at 4,333,232 to 4,334,716
_3869
PfGW456L13_3870 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 4,334,868 to 4,335,818
_3870
PfGW456L13_3871 - Pirin, at 4,336,148 to 4,336,870
_3871
Group
Condition
PfGW456L13
_3867
PfGW456L13
_3868
PfGW456L13
_3869
PfGW456L13
_3870
PfGW456L13
_3871
carbon source
Putrescine (C)
-0.4
-0.1
-0.4
-0.3
+0.2
carbon source
octanoate (C)
+0.2
-0.2
-0.3
-0.7
+0.0
stress
Lomefloxacin 0.0004 mM
+0.5
-0.2
-0.7
-0.6
+0.2
carbon source
D-Lactate (C)
+0.4
-0.0
-0.2
-0.7
-0.3
carbon source
L-Malic (C)
-0.6
-0.2
+0.3
-0.3
+0.1
carbon source
L-Arabinose (C)
+0.0
+0.1
+0.6
-1.0
-0.4
nitrogen source
L-Serine (N)
-0.2
+0.2
-0.2
-0.3
-0.1
nitrogen source
L-Isoleucine (N)
-0.5
-0.1
+0.2
-0.1
-0.2
carbon source
succinate (C)
-0.6
-0.3
+0.3
-0.3
+0.2
nitrogen source
Cytosine (N)
-0.4
+0.2
-0.1
-0.3
-0.0
carbon source
D-Fructose (C)
-0.1
-0.1
-0.5
-0.3
+0.6
stress
Chloride 400 mM
-0.5
-0.0
+0.4
-0.1
-0.1
stress
nitrite 10 mM
-0.4
-0.1
+0.2
+0.2
-0.1
carbon source
L-Valine (C)
-0.3
-0.1
+0.4
-0.2
+0.0
carbon source
L-Valine (C)
-0.3
+0.3
-0.1
+0.1
-0.2
stress
Aluminum chloride 5 mM
-0.4
-0.1
+0.5
-0.0
-0.1
carbon source
D-Mannose (C)
-0.3
-0.1
+0.4
-0.3
+0.1
nitrogen source
nitrate (N)
-0.5
+0.2
+0.2
+0.2
-0.2
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
-0.5
+0.1
-0.3
+0.4
+0.2
control
LB control
+0.1
+0.1
+0.3
-0.3
-0.2
nitrogen source
L-Lysine (N)
+0.3
+0.2
+0.1
-0.3
-0.1
carbon source
a-Ketoglutaric (C)
-0.5
+0.2
+0.2
-0.1
+0.3
carbon source
D-Lactate (C)
+0.1
-0.1
+0.5
-0.5
+0.1
nitrogen source
L-Proline (N)
+0.1
+0.2
+0.3
-0.3
-0.1
carbon source
L-Alanine (C)
-0.0
+0.2
+0.4
-0.3
+0.2
carbon source
a-Ketoglutaric (C)
+0.2
+0.4
+0.2
-0.4
-0.0
carbon source
L-Lactate (C)
-0.1
+0.3
+0.1
+0.6
-0.4
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
-0.2
-0.0
+0.4
+0.2
+0.3
carbon source
D-Fructose (C)
-0.0
-0.2
+0.1
+0.4
+0.3
carbon source
D-Glucosamine Hydrochloride (C)
-0.0
+0.3
+0.2
+0.5
-0.0
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