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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_3816 and PfGW456L13_3817 are separated by 157 nucleotides
PfGW456L13_3817 and PfGW456L13_3818 are separated by 10 nucleotides
PfGW456L13_3818 and PfGW456L13_3819 overlap by 4 nucleotides
PfGW456L13_3819 and PfGW456L13_3820 overlap by 27 nucleotides
PfGW456L13_3816 - 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25), at 4,284,120 to 4,284,893
_3816
PfGW456L13_3817 - Benzoate 1,2-dioxygenase, ferredoxin reductase component, at 4,285,051 to 4,286,064
_3817
PfGW456L13_3818 - Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10), at 4,286,075 to 4,286,563
_3818
PfGW456L13_3819 - Benzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.10), at 4,286,560 to 4,287,924
_3819
PfGW456L13_3820 - hypothetical protein, at 4,287,898 to 4,288,209
_3820
Group
Condition
PfGW456L13
_3816
PfGW456L13
_3817
PfGW456L13
_3818
PfGW456L13
_3819
PfGW456L13
_3820
carbon source
Trisodium citrate (C)
-0.3
-0.2
-0.8
-0.1
-0.5
carbon source
D-Glucose (C)
-0.7
+0.0
-0.2
-0.4
-0.2
carbon source
L-Arabinose (C)
-0.9
-0.2
+0.3
-0.2
-0.3
carbon source
Glycerol (C)
-0.2
-0.4
-0.2
-0.2
-0.3
carbon source
D-Gluconic Acid (C)
-0.3
-0.2
-0.6
+0.1
-0.1
control
LB control
-0.4
-0.1
-0.4
-0.0
-0.2
carbon source
L-Glutamine (C)
-0.4
-0.3
+0.1
-0.1
-0.3
carbon source
D-Lactate (C)
-0.3
-0.0
-0.4
+0.1
-0.3
carbon source
a-Ketoglutaric (C)
+0.2
-0.2
-0.5
-0.1
-0.3
carbon source
L-Tryptophan (C)
-0.5
-0.1
+0.1
+0.2
-0.5
nitrogen source
L-Valine (N)
-0.3
+0.1
-0.7
+0.1
+0.0
nitrogen source
nitrate (N)
-0.3
-0.2
-0.5
+0.0
+0.3
nitrogen source
L-Alanine (N)
-0.1
-0.2
-0.7
+0.1
+0.2
nitrogen source
L-Aspartic Acid (N)
-0.4
-0.2
-0.2
+0.1
+0.2
carbon source
L-Arabinose (C)
-0.2
-0.3
-0.4
-0.2
+0.5
carbon source
D-Gluconic Acid (C)
-0.4
-0.1
+0.2
-0.2
+0.2
nitrogen source
L-Threonine (N)
+0.1
+0.0
-0.7
+0.1
+0.1
carbon source
L-Alanine (C)
-0.5
-0.0
+0.5
-0.0
-0.2
carbon source
D-Fructose (C)
+0.1
+0.1
+0.2
-0.1
-0.6
nitrogen source
Gly-DL-Asp (N)
+0.3
-0.1
-0.5
+0.1
-0.1
carbon source
L-Phenylalanine (C)
-0.3
-0.0
+0.6
-0.1
-0.3
nitrogen source
Glycine (N)
+0.1
-0.1
-0.5
+0.2
+0.3
nitrogen source
Ammonium chloride (N)
-0.1
+0.2
-0.5
+0.2
+0.3
carbon source
L-Asparagine (C)
-0.2
-0.2
+0.5
+0.2
-0.2
stress
Lomefloxacin 0.0004 mM
+0.2
+0.0
-0.5
+0.1
+0.5
nitrogen source
L-Glutamic (N)
+0.2
-0.0
-0.6
+0.2
+0.4
nitrogen source
L-Citrulline (N)
+0.1
-0.0
-0.3
+0.1
+0.5
carbon source
octanoate (C)
-0.2
-0.2
+1.0
-0.3
-0.0
carbon source
D-Galactose (C)
-0.2
-0.2
+0.5
+0.1
+0.3
carbon source
Putrescine (C)
-0.4
+0.1
+0.9
+0.2
-0.1
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