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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_3786 and PfGW456L13_3787 are separated by 53 nucleotides
PfGW456L13_3787 and PfGW456L13_3788 are separated by 133 nucleotides
PfGW456L13_3788 and PfGW456L13_3789 are separated by 45 nucleotides
PfGW456L13_3789 and PfGW456L13_3790 are separated by 237 nucleotides
PfGW456L13_3786 - Phosphatidylcholine synthase (EC 2.7.8.24), at 4,259,148 to 4,259,870
_3786
PfGW456L13_3787 - hypothetical protein, at 4,259,924 to 4,260,259
_3787
PfGW456L13_3788 - PUTATIVE METHYLTRANSFERASE, at 4,260,393 to 4,261,205
_3788
PfGW456L13_3789 - hypothetical protein, at 4,261,251 to 4,261,460
_3789
PfGW456L13_3790 - Transcriptional regulator, AraC family, at 4,261,698 to 4,262,690
_3790
Group
Condition
PfGW456L13
_3786
PfGW456L13
_3787
PfGW456L13
_3788
PfGW456L13
_3789
PfGW456L13
_3790
carbon source
octanoate (C)
-0.2
-0.3
-1.4
-0.3
-0.2
carbon source
D-Lactate (C)
-0.0
-0.3
-1.2
-0.2
-0.2
carbon source
a-Ketoglutaric (C)
+0.0
-0.3
-0.9
-0.3
-0.1
carbon source
Trisodium citrate (C)
-0.1
-0.9
-0.1
-0.4
+0.1
carbon source
L-Glutamine (C)
-0.1
-0.9
-0.2
+0.1
+0.1
control
LB control
-0.1
-0.2
-0.6
-0.1
+0.1
carbon source
D-Fructose (C)
-0.1
-1.0
+0.3
+0.1
-0.1
carbon source
L-Valine (C)
-0.0
-0.2
-0.6
-0.1
+0.3
carbon source
D-Gluconic Acid (C)
-0.1
+0.2
-0.7
-0.1
+0.1
control
LB control
-0.0
-0.3
-0.5
+0.2
-0.0
nitrogen source
Gly-DL-Asp (N)
-0.2
+0.3
+0.3
-0.6
-0.2
carbon source
D-Galactose (C)
-0.0
-0.1
+0.5
-0.6
+0.1
carbon source
L-Malic (C)
-0.1
-0.5
+0.2
+0.1
+0.2
stress
nitrite 10 mM
-0.1
+0.1
+0.5
-0.4
-0.2
nitrogen source
L-Citrulline (N)
+0.1
-0.1
+0.7
-0.3
-0.2
nitrogen source
Uridine (N)
+0.1
-0.0
+0.5
-0.5
-0.1
nitrogen source
nitrate (N)
+0.0
-0.5
+0.7
-0.1
-0.1
nitrogen source
L-Proline (N)
+0.1
-0.2
+0.4
-0.2
+0.1
stress
Vancomycin 0.125 mg/ml
+0.1
+0.3
+0.4
-0.4
+0.0
carbon source
D-Galactose (C)
+0.1
-0.4
+0.1
+0.3
+0.2
stress
Aluminum chloride 5 mM
+0.1
-0.0
+0.7
+0.0
-0.3
stress
Vancomycin 0.5 mg/ml
-0.0
-0.0
+0.7
-0.4
+0.3
nitrogen source
L-Lysine (N)
-0.1
+0.3
+0.5
+0.0
-0.2
stress
Bacitracin 0.5 mg/ml
+0.0
-0.2
+0.7
+0.1
-0.0
carbon source
L-Lactate (C)
+0.3
+0.2
+0.5
-0.5
+0.1
carbon source
a-Ketoglutaric (C)
+0.0
+0.3
+0.8
-0.2
-0.0
stress
A22 0.04 mg/ml
+0.2
+0.1
+0.6
+0.1
+0.2
nitrogen source
L-Leucine (N)
+0.3
+0.3
+0.7
-0.1
+0.0
control
LB
-0.0
+0.3
+0.6
+0.1
+0.3
stress
Lomefloxacin 0.0004 mM
+0.2
+0.2
+0.5
+0.2
+0.3
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