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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_3753 and PfGW456L13_3754 overlap by 4 nucleotides
PfGW456L13_3754 and PfGW456L13_3755 are separated by 23 nucleotides
PfGW456L13_3755 and PfGW456L13_3756 overlap by 4 nucleotides
PfGW456L13_3756 and PfGW456L13_3757 are separated by 3 nucleotides
PfGW456L13_3753 - Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10), at 4,226,836 to 4,227,336
_3753
PfGW456L13_3754 - Ring hydroxylating dioxygenase, alpha subunit/Rieske (2Fe-2S) protein (EC 1.14.12.18), at 4,227,333 to 4,228,616
_3754
PfGW456L13_3755 - Amidase (EC 3.5.1.4), at 4,228,640 to 4,229,764
_3755
PfGW456L13_3756 - Succinyl-CoA synthetase, alpha subunit, at 4,229,761 to 4,230,246
_3756
PfGW456L13_3757 - FIG01001988: hypothetical protein, at 4,230,250 to 4,230,621
_3757
Group
Condition
PfGW456L13
_3753
PfGW456L13
_3754
PfGW456L13
_3755
PfGW456L13
_3756
PfGW456L13
_3757
carbon source
a-Ketoglutaric (C)
+0.3
+0.1
-1.4
-1.6
-0.2
carbon source
Glycerol (C)
+0.1
+0.2
-2.8
+0.4
+0.1
carbon source
D-Galactose (C)
+0.1
-1.0
-0.9
-0.4
+0.2
carbon source
L-Glutamine (C)
-0.3
-0.7
-0.8
-0.2
+0.2
carbon source
Trisodium citrate (C)
+0.1
-0.0
-0.9
-1.3
+0.4
carbon source
D-Gluconic Acid (C)
+0.4
-0.8
-0.1
-0.9
-0.3
carbon source
Putrescine (C)
+0.0
-1.1
-0.8
+0.6
-0.1
control
LB control
-0.1
-0.3
-0.5
-0.5
+0.2
nitrogen source
L-Leucine (N)
+0.1
-0.1
-0.8
-0.3
+0.0
stress
Aluminum chloride 2.5 mM
-0.5
-0.3
+0.2
-0.3
-0.2
stress
Vancomycin 0.25 mg/ml
+0.2
-0.1
-0.5
-0.4
+0.0
carbon source
D-Glucosamine Hydrochloride (C)
+0.2
-0.9
+0.0
-0.2
-0.0
carbon source
D-Lactate (C)
-0.3
-0.4
+0.3
-0.4
-0.0
nitrogen source
Gly-Glu (N)
+0.3
-0.3
+0.2
-0.9
-0.1
carbon source
L-Phenylalanine (C)
+0.1
-0.2
-0.7
+0.4
+0.0
nitrogen source
Ammonium chloride (N)
-0.4
-0.1
-0.4
+0.4
+0.2
carbon source
D-Fructose (C)
-0.8
+0.1
+0.7
-0.1
-0.3
stress
Thallium(I) acetate 0.002 mg/ml
+0.1
+0.2
-0.7
-0.1
+0.1
carbon source
L-Lactate (C)
+0.1
-0.1
+0.5
-0.7
-0.0
carbon source
D-Lactate (C)
-0.4
+0.9
-1.0
-0.0
+0.4
carbon source
D,L-Lactate (C)
-0.1
+0.3
-0.9
+0.4
+0.2
carbon source
D-Mannose (C)
-0.0
+0.5
-0.6
-0.0
+0.2
carbon source
D-Gluconic Acid (C)
+0.2
+0.3
+0.2
+0.2
-0.7
carbon source
octanoate (C)
+0.4
-0.1
+0.4
-0.0
-0.4
carbon source
D-Fructose (C)
+0.5
+0.4
-0.5
-0.5
+0.3
stress
Lomefloxacin 0.0004 mM
-0.7
+0.1
+0.4
+0.1
+0.4
nitrogen source
L-Histidine (N)
+0.1
+0.0
-0.2
+0.8
-0.3
carbon source
L-Arabinose (C)
+0.1
+0.8
-1.1
+0.6
+0.2
lb
LB
-0.0
+0.2
+0.9
-0.3
-0.2
carbon source
a-Ketoglutaric (C)
+0.0
+0.1
+0.5
-0.3
+0.4
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