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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_3742 and PfGW456L13_3743 are separated by 54 nucleotides
PfGW456L13_3743 and PfGW456L13_3744 are separated by 658 nucleotides
PfGW456L13_3744 and PfGW456L13_3745 overlap by 8 nucleotides
PfGW456L13_3745 and PfGW456L13_3746 are separated by 9 nucleotides
PfGW456L13_3742 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 4,213,618 to 4,214,940
_3742
PfGW456L13_3743 - Chemotactic transducer, at 4,214,995 to 4,217,121
_3743
PfGW456L13_3744 - Ethanolamine permease, at 4,217,780 to 4,219,093
_3744
PfGW456L13_3745 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 4,219,086 to 4,220,366
_3745
PfGW456L13_3746 - Homoserine kinase (EC 2.7.1.39), at 4,220,376 to 4,221,392
_3746
Group
Condition
PfGW456L13
_3742
PfGW456L13
_3743
PfGW456L13
_3744
PfGW456L13
_3745
PfGW456L13
_3746
stress
Lomefloxacin 0.0004 mM
-0.2
+0.2
-0.7
+0.1
-0.8
carbon source
L-Malic (C)
-0.1
-0.0
-0.8
-0.1
+0.1
carbon source
D-Lactate (C)
-0.0
+0.2
-0.5
-0.5
-0.2
carbon source
L-Arabinose (C)
-0.4
+0.0
+0.2
-0.3
-0.4
control
LB
+0.0
+0.1
-0.6
-0.1
-0.1
carbon source
Glycerol (C)
+0.2
-0.1
+0.0
-0.5
-0.1
carbon source
a-Ketoglutaric (C)
+0.1
-0.4
+0.5
-0.1
-0.4
carbon source
D-Fructose (C)
+0.0
+0.3
-0.1
-0.2
-0.4
lb
LB
+0.1
-0.3
+0.3
-0.0
-0.3
carbon source
octanoate (C)
-0.2
+0.2
-0.5
+0.1
+0.3
stress
Benzethonium chloride 0.0125 mM
-0.1
+0.2
-0.4
-0.1
+0.1
carbon source
D,L-Lactate (C)
-0.4
+0.3
-0.3
+0.1
+0.2
carbon source
L-Glutamine (C)
+0.2
+0.0
-0.4
-0.1
+0.2
carbon source
D-Lactate (C)
-0.4
-0.2
+0.4
+0.1
+0.1
stress
Dimethyl Sulfoxide 7.5 vol%
+0.2
+0.1
+0.3
+0.0
-0.4
stress
Aluminum chloride 5 mM
-0.1
+0.1
-0.1
-0.3
+0.5
carbon source
D-Gluconic Acid (C)
+0.2
+0.0
+0.6
-0.4
-0.3
nitrogen source
D-Serine (N)
-0.2
-0.2
+0.2
-0.2
+0.5
carbon source
D-Galactose (C)
+0.1
-0.1
+0.3
-0.3
+0.2
carbon source
D-Galactose (C)
+0.2
+0.2
+0.2
-0.2
-0.2
nitrogen source
Gly-DL-Asp (N)
+0.1
+0.3
-0.3
+0.1
+0.3
carbon source
L-Arabinose (C)
+0.0
+0.2
+0.4
-0.3
+0.1
carbon source
a-Ketoglutaric (C)
-0.2
+0.4
-0.2
+0.1
+0.4
carbon source
L-Histidine (C)
-0.1
+0.4
+0.3
+0.0
-0.2
carbon source
D-Gluconic Acid (C)
-0.2
+0.3
-0.1
-0.0
+0.6
carbon source
D-Alanine (C)
+0.2
+0.0
+0.3
-0.2
+0.3
carbon source
L-Tryptophan (C)
-0.1
+0.1
+0.4
-0.1
+0.4
carbon source
D-Fructose (C)
-0.3
+0.4
+0.5
-0.4
+0.5
carbon source
L-Alanine (C)
+0.2
-0.1
+0.3
-0.0
+0.3
carbon source
D-Glucosamine Hydrochloride (C)
+0.3
+0.0
+0.4
+0.2
+0.2
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