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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_3736 and PfGW456L13_3737 are separated by 106 nucleotides
PfGW456L13_3737 and PfGW456L13_3738 are separated by 48 nucleotides
PfGW456L13_3738 and PfGW456L13_3739 are separated by 1729 nucleotides
PfGW456L13_3739 and PfGW456L13_3740 are separated by 2538 nucleotides
PfGW456L13_3736 - potassium efflux system KefA, at 4,202,529 to 4,204,925
_3736
PfGW456L13_3737 - Aldehyde dehydrogenase (EC 1.2.1.3), at 4,205,032 to 4,206,522
_3737
PfGW456L13_3738 - Cytochrome c2, at 4,206,571 to 4,206,960
_3738
PfGW456L13_3739 - hypothetical protein, at 4,208,690 to 4,209,889
_3739
PfGW456L13_3740 - Transcriptional activator feaR, at 4,212,428 to 4,213,336
_3740
Group
Condition
PfGW456L13
_3736
PfGW456L13
_3737
PfGW456L13
_3738
PfGW456L13
_3739
PfGW456L13
_3740
carbon source
octanoate (C)
+0.0
-0.0
+0.3
-1.3
-1.8
carbon source
L-Arabinose (C)
+0.0
-1.0
-0.2
+0.1
-1.2
carbon source
succinate (C)
-0.2
-0.4
-0.5
-1.2
+0.4
carbon source
a-Ketoglutaric (C)
-0.5
-0.7
-0.3
-0.1
-0.2
carbon source
a-Ketoglutaric (C)
-0.1
-0.1
-0.4
-0.9
-0.2
carbon source
Putrescine (C)
+0.1
+0.1
-0.6
-0.7
-0.4
carbon source
D-Serine (C)
-0.2
-0.0
-0.2
+0.0
-1.1
carbon source
D-Glucose (C)
+0.3
-1.1
-0.0
-0.3
-0.3
carbon source
D-Mannose (C)
+0.1
-0.2
-0.4
-0.4
-0.4
nitrogen source
L-Glutamine (N)
+0.1
+0.2
+0.0
-0.4
-0.8
carbon source
D-Lactate (C)
-0.1
-0.2
-0.2
+0.3
-0.7
carbon source
D-Gluconic Acid (C)
-0.2
-0.4
-0.1
-1.0
+0.8
carbon source
D,L-Lactate (C)
+0.2
-0.5
-0.1
-0.1
-0.4
carbon source
D-Lactate (C)
-0.2
+0.3
-0.6
+0.1
-0.4
carbon source
D-Galactose (C)
+0.1
+0.1
+0.3
-0.3
-0.9
nitrogen source
Gly-Glu (N)
-0.0
-0.2
-0.2
+0.3
-0.6
carbon source
casaminos (C)
-0.0
-0.3
-0.2
-0.5
+0.3
nitrogen source
L-Serine (N)
+0.2
-0.5
-0.2
+0.1
-0.3
stress
A22 0.04 mg/ml
-0.1
+0.0
-0.2
-0.7
+0.4
carbon source
L-Arabinose (C)
+0.1
-1.0
-0.0
+0.0
+0.4
stress
Thallium(I) acetate 0.002 mg/ml
-0.1
-0.4
-0.3
+0.6
-0.2
stress
Nickel (II) chloride 1 mM
-0.1
+0.3
-0.2
+0.3
-0.6
carbon source
Glycerol (C)
-0.1
+0.2
-0.3
+0.4
-0.3
stress
Lomefloxacin 0.0004 mM
-0.3
+0.4
+0.0
+0.1
-0.4
carbon source
D-Alanine (C)
-0.1
+0.6
-0.1
-0.4
+0.2
carbon source
D-Fructose (C)
+0.1
-0.8
+0.1
+0.5
+0.2
carbon source
D-Fructose (C)
-0.1
+0.1
-0.3
-0.3
+1.0
nitrogen source
Ammonium chloride (N)
+0.3
+0.5
-0.2
-0.4
+0.2
carbon source
Glycerol (C)
-0.2
+0.4
-0.1
-0.1
+0.4
carbon source
D-Glucosamine Hydrochloride (C)
+0.1
+0.2
+0.1
+0.4
+0.7
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