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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_3728 and PfGW456L13_3729 are separated by 134 nucleotides
PfGW456L13_3729 and PfGW456L13_3730 are separated by 183 nucleotides
PfGW456L13_3730 and PfGW456L13_3731 are separated by 54 nucleotides
PfGW456L13_3731 and PfGW456L13_3732 are separated by 163 nucleotides
PfGW456L13_3728 - Transcriptional Regulator, AraC family, at 4,193,928 to 4,194,743
_3728
PfGW456L13_3729 - alkylhydroperoxidase AhpD domain protein, at 4,194,878 to 4,195,396
_3729
PfGW456L13_3730 - Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2), at 4,195,580 to 4,196,668
_3730
PfGW456L13_3731 - Oxidoreductase-related protein, at 4,196,723 to 4,198,024
_3731
PfGW456L13_3732 - Glycine cleavage system transcriptional activator, at 4,198,188 to 4,199,087
_3732
Group
Condition
PfGW456L13
_3728
PfGW456L13
_3729
PfGW456L13
_3730
PfGW456L13
_3731
PfGW456L13
_3732
carbon source
D-Gluconic Acid (C)
-0.4
-0.2
-0.0
-0.2
-0.7
carbon source
L-Glutamine (C)
-0.2
-0.4
+0.1
-0.0
-0.7
carbon source
L-Lactate (C)
+0.3
-1.4
+0.1
-0.7
+0.4
carbon source
D-Lactate (C)
-0.6
-0.2
+0.0
-0.2
-0.1
nitrogen source
Cytosine (N)
-0.3
+0.0
-0.1
-0.3
-0.2
carbon source
D-Galactose (C)
-0.4
-0.2
-0.2
+0.2
-0.3
nitrogen source
L-Asparagine (N)
-0.0
-0.1
+0.1
-0.2
-0.7
carbon source
Glycerol (C)
+0.2
-0.3
-0.2
-0.2
-0.3
carbon source
Putrescine (C)
-0.3
+0.1
-0.1
-0.2
-0.2
carbon source
D-Fructose (C)
-0.2
+0.1
+0.1
-0.1
-0.5
carbon source
a-Ketoglutaric (C)
-0.2
-0.7
-0.1
+0.3
-0.1
carbon source
Tween 20 (C)
+0.0
-0.6
-0.1
+0.2
-0.1
carbon source
D-Glucose (C)
-0.2
+0.0
-0.0
-0.9
+0.6
nitrogen source
NAG (N)
-0.0
+0.2
+0.1
-0.0
-0.7
stress
Cephalothin 3 mg/ml
-0.4
+0.2
+0.2
+0.1
-0.4
nitrogen source
L-Lysine (N)
-0.0
+0.3
-0.1
-0.3
-0.2
nitrogen source
L-Valine (N)
-0.3
+0.1
-0.2
-0.1
+0.2
carbon source
L-Alanine (C)
-0.2
-0.3
-0.0
+0.3
+0.1
stress
Aluminum chloride 2.5 mM
+0.1
+0.2
-0.2
-0.4
+0.2
stress
Bacitracin 0.5 mg/ml
-0.1
-0.1
+0.1
-0.2
+0.3
nitrogen source
Gly-Glu (N)
+0.3
-0.2
-0.3
+0.1
+0.2
stress
Cisplatin 0.0125 mg/ml
-0.3
+0.1
-0.0
+0.0
+0.4
stress
Bacitracin 1 mg/ml
+0.2
-0.3
+0.0
-0.2
+0.5
lb
LB
+0.2
+0.2
-0.2
-0.1
+0.2
carbon source
D-Glucosamine Hydrochloride (C)
-0.0
-0.1
-0.0
-0.3
+0.7
carbon source
L-Arabinose (C)
-0.1
+0.3
+0.2
+0.4
-0.5
stress
A22 0.04 mg/ml
+0.1
-0.2
+0.1
+0.2
+0.3
stress
Lomefloxacin 0.0004 mM
+0.9
-0.3
+0.0
-0.5
+0.5
carbon source
D-Galactose (C)
+0.3
-0.1
+0.1
+0.3
-0.1
carbon source
L-Malic (C)
+0.3
-0.2
+0.2
-0.2
+0.9
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