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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_3656 and PfGW456L13_3657 are separated by 37 nucleotides
PfGW456L13_3657 and PfGW456L13_3658 overlap by 4 nucleotides
PfGW456L13_3658 and PfGW456L13_3659 are separated by 208 nucleotides
PfGW456L13_3659 and PfGW456L13_3660 are separated by 216 nucleotides
PfGW456L13_3656 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 4,116,237 to 4,117,043
_3656
PfGW456L13_3657 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 4,117,081 to 4,118,100
_3657
PfGW456L13_3658 - 3-oxosteroid 1-dehydrogenase (EC 1.3.99.4), at 4,118,097 to 4,119,836
_3658
PfGW456L13_3659 - hypothetical protein, at 4,120,045 to 4,120,617
_3659
PfGW456L13_3660 - Isochorismate pyruvate-lyase (EC 4.-.-.-), at 4,120,834 to 4,121,160
_3660
Group
Condition
PfGW456L13
_3656
PfGW456L13
_3657
PfGW456L13
_3658
PfGW456L13
_3659
PfGW456L13
_3660
carbon source
octanoate (C)
-0.1
-0.4
+0.2
-0.3
-1.0
carbon source
Putrescine (C)
-0.0
-0.9
+0.3
-0.5
-0.3
carbon source
D-Gluconic Acid (C)
-0.2
-0.6
+0.0
-0.1
-0.4
carbon source
D-Mannose (C)
-0.1
-0.5
-0.2
-0.3
+0.1
carbon source
L-Phenylalanine (C)
-0.2
-0.0
-0.1
-0.2
-0.6
carbon source
D-Galactose (C)
-0.6
-0.2
-0.0
-0.1
-0.1
carbon source
L-Asparagine (C)
-0.3
-0.3
+0.0
-0.1
-0.2
carbon source
D,L-Lactate (C)
-0.1
-0.3
-0.2
-0.1
-0.1
carbon source
D-Fructose (C)
-0.1
-0.2
+0.2
-0.6
-0.0
carbon source
L-Arabinose (C)
+0.1
-0.1
+0.1
-0.1
-0.7
carbon source
a-Ketoglutaric (C)
+0.1
-0.2
+0.0
+0.1
-0.8
carbon source
L-Lactate (C)
-0.5
-0.1
-0.0
+0.3
-0.4
carbon source
D-Fructose (C)
-0.4
-0.4
+0.1
+0.0
-0.1
nitrogen source
Gly-Glu (N)
-0.0
+0.1
-0.1
-0.3
-0.4
stress
Lomefloxacin 0.0004 mM
-0.1
-0.1
+0.2
-0.1
-0.4
nitrogen source
L-Lysine (N)
+0.1
+0.1
-0.0
-0.1
-0.7
carbon source
succinate (C)
+0.3
-0.2
-0.3
+0.0
-0.3
stress
Dimethyl Sulfoxide 7.5 vol%
-0.1
+0.2
+0.1
-0.0
-0.5
carbon source
L-Arabinose (C)
-0.1
+0.1
+0.0
-0.5
+0.1
lb
LB
-0.0
+0.3
-0.1
-0.3
-0.1
carbon source
a-Ketoglutaric (C)
-0.0
-0.4
+0.0
-0.3
+0.5
nitrogen source
L-Citrulline (N)
-0.0
+0.4
-0.2
-0.0
-0.4
nitrogen source
L-Aspartic Acid (N)
-0.2
+0.4
+0.0
-0.3
-0.1
control
LB control
+0.2
-0.3
-0.1
+0.1
+0.2
carbon source
D-Glucosamine Hydrochloride (C)
-0.2
+0.1
-0.2
-0.1
+0.4
carbon source
L-Malic (C)
-0.0
-0.5
-0.0
-0.1
+0.8
carbon source
L-Tryptophan (C)
-0.0
-0.2
-0.2
-0.2
+0.7
nitrogen source
L-Histidine (N)
-0.1
+0.2
+0.1
-0.2
+0.3
nitrogen source
Gly-DL-Asp (N)
+0.1
+0.4
+0.0
-0.2
+0.3
carbon source
D-Lactate (C)
+0.3
+0.6
+0.1
-0.1
+0.7
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